Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17880 and CA265_RS17885 overlap by 4 nucleotides CA265_RS17885 and CA265_RS17890 are separated by 429 nucleotides
CA265_RS17880: CA265_RS17880 - hypothetical protein, at 4,472,564 to 4,474,117
_RS17880
CA265_RS17885: CA265_RS17885 - CopY family transcriptional repressor, at 4,474,114 to 4,474,482
_RS17885
CA265_RS17890: CA265_RS17890 - hypothetical protein, at 4,474,912 to 4,475,910
_RS17890
Position (kb) 4474
4475 Strain fitness (log2 ratio) -1
0
1 at 4473.119 kb on + strand, within CA265_RS17880 at 4473.120 kb on - strand, within CA265_RS17880 at 4473.151 kb on + strand, within CA265_RS17880 at 4473.169 kb on - strand, within CA265_RS17880 at 4473.307 kb on - strand, within CA265_RS17880 at 4473.343 kb on - strand, within CA265_RS17880 at 4473.385 kb on + strand, within CA265_RS17880 at 4473.412 kb on + strand, within CA265_RS17880 at 4473.439 kb on - strand, within CA265_RS17880 at 4473.448 kb on + strand, within CA265_RS17880 at 4473.449 kb on - strand, within CA265_RS17880 at 4473.460 kb on + strand, within CA265_RS17880 at 4473.523 kb on + strand, within CA265_RS17880 at 4473.523 kb on + strand, within CA265_RS17880 at 4473.523 kb on + strand, within CA265_RS17880 at 4473.551 kb on + strand, within CA265_RS17880 at 4473.559 kb on + strand, within CA265_RS17880 at 4473.594 kb on - strand, within CA265_RS17880 at 4473.659 kb on - strand, within CA265_RS17880 at 4473.693 kb on + strand, within CA265_RS17880 at 4473.697 kb on + strand, within CA265_RS17880 at 4473.764 kb on + strand, within CA265_RS17880 at 4473.765 kb on - strand, within CA265_RS17880 at 4473.806 kb on + strand, within CA265_RS17880 at 4473.819 kb on + strand, within CA265_RS17880 at 4473.819 kb on + strand, within CA265_RS17880 at 4473.820 kb on - strand, within CA265_RS17880 at 4473.887 kb on + strand, within CA265_RS17880 at 4473.907 kb on - strand, within CA265_RS17880 at 4473.911 kb on + strand, within CA265_RS17880 at 4473.945 kb on - strand, within CA265_RS17880 at 4474.012 kb on - strand at 4474.012 kb on - strand at 4474.012 kb on - strand at 4474.042 kb on + strand at 4474.081 kb on + strand at 4474.081 kb on + strand at 4474.098 kb on - strand at 4474.100 kb on + strand at 4474.110 kb on - strand at 4474.159 kb on - strand, within CA265_RS17885 at 4474.191 kb on + strand, within CA265_RS17885 at 4474.316 kb on + strand, within CA265_RS17885 at 4474.320 kb on + strand, within CA265_RS17885 at 4474.339 kb on + strand, within CA265_RS17885 at 4474.368 kb on + strand, within CA265_RS17885 at 4474.408 kb on - strand, within CA265_RS17885 at 4474.450 kb on - strand at 4474.452 kb on + strand at 4474.452 kb on + strand at 4474.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,473,119 + CA265_RS17880 0.36 -0.5 4,473,120 - CA265_RS17880 0.36 +0.1 4,473,151 + CA265_RS17880 0.38 +0.0 4,473,169 - CA265_RS17880 0.39 -0.5 4,473,307 - CA265_RS17880 0.48 +0.5 4,473,343 - CA265_RS17880 0.50 +0.9 4,473,385 + CA265_RS17880 0.53 -1.0 4,473,412 + CA265_RS17880 0.55 +0.1 4,473,439 - CA265_RS17880 0.56 +0.5 4,473,448 + CA265_RS17880 0.57 -0.8 4,473,449 - CA265_RS17880 0.57 -0.1 4,473,460 + CA265_RS17880 0.58 +0.3 4,473,523 + CA265_RS17880 0.62 -0.1 4,473,523 + CA265_RS17880 0.62 +0.5 4,473,523 + CA265_RS17880 0.62 +0.1 4,473,551 + CA265_RS17880 0.64 +0.4 4,473,559 + CA265_RS17880 0.64 +0.1 4,473,594 - CA265_RS17880 0.66 -0.7 4,473,659 - CA265_RS17880 0.70 +1.3 4,473,693 + CA265_RS17880 0.73 +0.7 4,473,697 + CA265_RS17880 0.73 +0.9 4,473,764 + CA265_RS17880 0.77 +1.3 4,473,765 - CA265_RS17880 0.77 -0.2 4,473,806 + CA265_RS17880 0.80 +1.7 4,473,819 + CA265_RS17880 0.81 +1.1 4,473,819 + CA265_RS17880 0.81 +0.7 4,473,820 - CA265_RS17880 0.81 -0.5 4,473,887 + CA265_RS17880 0.85 -0.3 4,473,907 - CA265_RS17880 0.86 +0.2 4,473,911 + CA265_RS17880 0.87 +0.2 4,473,945 - CA265_RS17880 0.89 +0.1 4,474,012 - +0.1 4,474,012 - -0.3 4,474,012 - +0.3 4,474,042 + +0.5 4,474,081 + -0.2 4,474,081 + +0.5 4,474,098 - +0.0 4,474,100 + +0.3 4,474,110 - +0.3 4,474,159 - CA265_RS17885 0.12 +0.1 4,474,191 + CA265_RS17885 0.21 +0.5 4,474,316 + CA265_RS17885 0.55 -1.1 4,474,320 + CA265_RS17885 0.56 -1.5 4,474,339 + CA265_RS17885 0.61 +0.4 4,474,368 + CA265_RS17885 0.69 +1.3 4,474,408 - CA265_RS17885 0.80 -0.1 4,474,450 - +0.6 4,474,452 + +0.2 4,474,452 + -0.6 4,474,472 - +0.1
Or see this region's nucleotide sequence