Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03635 and CA265_RS03640 are separated by 49 nucleotides CA265_RS03640 and CA265_RS03645 are separated by 275 nucleotides
CA265_RS03635: CA265_RS03635 - histidinol dehydrogenase, at 868,281 to 869,561
_RS03635
CA265_RS03640: CA265_RS03640 - ATP phosphoribosyltransferase, at 869,611 to 870,462
_RS03640
CA265_RS03645: CA265_RS03645 - L,D-transpeptidase, at 870,738 to 872,300
_RS03645
Position (kb) 869
870
871 Strain fitness (log2 ratio) -1
0
1 at 868.644 kb on + strand, within CA265_RS03635 at 868.766 kb on + strand, within CA265_RS03635 at 868.855 kb on - strand, within CA265_RS03635 at 868.877 kb on + strand, within CA265_RS03635 at 868.887 kb on + strand, within CA265_RS03635 at 868.888 kb on - strand, within CA265_RS03635 at 868.949 kb on + strand, within CA265_RS03635 at 868.949 kb on + strand, within CA265_RS03635 at 868.951 kb on + strand, within CA265_RS03635 at 868.952 kb on - strand, within CA265_RS03635 at 868.954 kb on - strand at 869.013 kb on + strand, within CA265_RS03635 at 869.013 kb on + strand, within CA265_RS03635 at 869.060 kb on - strand, within CA265_RS03635 at 869.161 kb on - strand, within CA265_RS03635 at 869.186 kb on - strand, within CA265_RS03635 at 869.815 kb on + strand, within CA265_RS03640 at 869.815 kb on + strand, within CA265_RS03640 at 869.816 kb on - strand, within CA265_RS03640 at 869.825 kb on + strand, within CA265_RS03640 at 869.826 kb on - strand, within CA265_RS03640 at 869.848 kb on + strand, within CA265_RS03640 at 869.968 kb on + strand, within CA265_RS03640 at 869.987 kb on - strand, within CA265_RS03640 at 869.987 kb on - strand, within CA265_RS03640 at 870.017 kb on - strand, within CA265_RS03640 at 870.034 kb on + strand, within CA265_RS03640 at 870.108 kb on - strand, within CA265_RS03640 at 870.120 kb on + strand, within CA265_RS03640 at 870.239 kb on - strand, within CA265_RS03640 at 870.286 kb on + strand, within CA265_RS03640 at 870.383 kb on - strand at 870.401 kb on - strand at 870.401 kb on - strand at 870.473 kb on - strand at 870.474 kb on + strand at 870.530 kb on - strand at 870.556 kb on - strand at 870.562 kb on - strand at 870.593 kb on - strand at 870.605 kb on - strand at 870.637 kb on - strand at 870.675 kb on + strand at 870.687 kb on - strand at 870.698 kb on - strand at 870.707 kb on - strand at 870.801 kb on - strand at 870.874 kb on + strand at 870.874 kb on + strand at 870.967 kb on - strand, within CA265_RS03645 at 870.978 kb on - strand, within CA265_RS03645 at 870.987 kb on - strand, within CA265_RS03645 at 871.030 kb on - strand, within CA265_RS03645 at 871.058 kb on + strand, within CA265_RS03645 at 871.106 kb on - strand, within CA265_RS03645 at 871.168 kb on + strand, within CA265_RS03645 at 871.169 kb on - strand, within CA265_RS03645 at 871.199 kb on + strand, within CA265_RS03645 at 871.212 kb on + strand, within CA265_RS03645 at 871.251 kb on + strand, within CA265_RS03645 at 871.252 kb on - strand, within CA265_RS03645 at 871.280 kb on - strand, within CA265_RS03645 at 871.289 kb on + strand, within CA265_RS03645 at 871.320 kb on - strand, within CA265_RS03645 at 871.324 kb on + strand, within CA265_RS03645 at 871.354 kb on - strand, within CA265_RS03645 at 871.355 kb on + strand, within CA265_RS03645 at 871.379 kb on - strand, within CA265_RS03645
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 868,644 + CA265_RS03635 0.28 -0.4 868,766 + CA265_RS03635 0.38 +0.1 868,855 - CA265_RS03635 0.45 -0.1 868,877 + CA265_RS03635 0.47 +0.9 868,887 + CA265_RS03635 0.47 -0.4 868,888 - CA265_RS03635 0.47 +0.6 868,949 + CA265_RS03635 0.52 -1.6 868,949 + CA265_RS03635 0.52 +0.2 868,951 + CA265_RS03635 0.52 +0.3 868,952 - CA265_RS03635 0.52 +0.3 868,954 - -0.3 869,013 + CA265_RS03635 0.57 -1.3 869,013 + CA265_RS03635 0.57 +1.3 869,060 - CA265_RS03635 0.61 -0.9 869,161 - CA265_RS03635 0.69 -0.8 869,186 - CA265_RS03635 0.71 +1.4 869,815 + CA265_RS03640 0.24 -0.2 869,815 + CA265_RS03640 0.24 +0.6 869,816 - CA265_RS03640 0.24 -0.0 869,825 + CA265_RS03640 0.25 -1.3 869,826 - CA265_RS03640 0.25 -0.3 869,848 + CA265_RS03640 0.28 -0.3 869,968 + CA265_RS03640 0.42 +0.4 869,987 - CA265_RS03640 0.44 +0.4 869,987 - CA265_RS03640 0.44 +0.0 870,017 - CA265_RS03640 0.48 +0.7 870,034 + CA265_RS03640 0.50 +0.2 870,108 - CA265_RS03640 0.58 +0.4 870,120 + CA265_RS03640 0.60 +0.7 870,239 - CA265_RS03640 0.74 -0.4 870,286 + CA265_RS03640 0.79 +1.0 870,383 - +0.6 870,401 - +0.7 870,401 - +0.3 870,473 - +0.8 870,474 + +0.1 870,530 - -1.0 870,556 - +0.3 870,562 - +0.1 870,593 - +0.4 870,605 - +0.1 870,637 - -0.4 870,675 + -0.5 870,687 - -0.1 870,698 - +0.5 870,707 - -1.2 870,801 - -0.3 870,874 + -0.5 870,874 + +0.1 870,967 - CA265_RS03645 0.15 +0.1 870,978 - CA265_RS03645 0.15 -0.5 870,987 - CA265_RS03645 0.16 -0.2 871,030 - CA265_RS03645 0.19 -0.8 871,058 + CA265_RS03645 0.20 +0.1 871,106 - CA265_RS03645 0.24 +0.2 871,168 + CA265_RS03645 0.28 -0.8 871,169 - CA265_RS03645 0.28 +0.5 871,199 + CA265_RS03645 0.29 -1.3 871,212 + CA265_RS03645 0.30 +0.4 871,251 + CA265_RS03645 0.33 -0.3 871,252 - CA265_RS03645 0.33 +0.3 871,280 - CA265_RS03645 0.35 +0.5 871,289 + CA265_RS03645 0.35 +0.2 871,320 - CA265_RS03645 0.37 +0.1 871,324 + CA265_RS03645 0.37 -0.4 871,354 - CA265_RS03645 0.39 -0.0 871,355 + CA265_RS03645 0.39 +0.3 871,379 - CA265_RS03645 0.41 +0.2
Or see this region's nucleotide sequence