Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03515 and CA265_RS03520 are separated by 71 nucleotides CA265_RS03520 and CA265_RS03525 are separated by 259 nucleotides CA265_RS03525 and CA265_RS03530 are separated by 106 nucleotides CA265_RS03530 and CA265_RS03535 are separated by 70 nucleotides
CA265_RS03515: CA265_RS03515 - Fe-S assembly protein IscX, at 847,282 to 847,524
_RS03515
CA265_RS03520: CA265_RS03520 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 847,596 to 848,123
_RS03520
CA265_RS03525: CA265_RS03525 - hypothetical protein, at 848,383 to 849,213
_RS03525
CA265_RS03530: CA265_RS03530 - hypothetical protein, at 849,320 to 849,709
_RS03530
CA265_RS03535: CA265_RS03535 - septum formation protein Maf, at 849,780 to 850,346
_RS03535
Position (kb) 848
849
850 Strain fitness (log2 ratio) -1
0
1
2 at 847.392 kb on + strand, within CA265_RS03515 at 847.502 kb on - strand at 847.642 kb on + strand at 847.643 kb on - strand at 847.683 kb on - strand, within CA265_RS03520 at 847.713 kb on - strand, within CA265_RS03520 at 847.769 kb on - strand, within CA265_RS03520 at 847.785 kb on - strand, within CA265_RS03520 at 847.785 kb on - strand, within CA265_RS03520 at 847.847 kb on + strand, within CA265_RS03520 at 847.847 kb on + strand, within CA265_RS03520 at 847.909 kb on - strand, within CA265_RS03520 at 847.923 kb on - strand, within CA265_RS03520 at 847.940 kb on - strand, within CA265_RS03520 at 847.940 kb on - strand, within CA265_RS03520 at 847.982 kb on - strand, within CA265_RS03520 at 848.003 kb on + strand, within CA265_RS03520 at 848.003 kb on + strand, within CA265_RS03520 at 848.004 kb on - strand, within CA265_RS03520 at 848.004 kb on - strand, within CA265_RS03520 at 848.004 kb on - strand, within CA265_RS03520 at 848.020 kb on - strand, within CA265_RS03520 at 848.133 kb on + strand at 848.133 kb on + strand at 848.148 kb on + strand at 848.149 kb on - strand at 848.149 kb on - strand at 848.159 kb on + strand at 848.160 kb on - strand at 848.160 kb on - strand at 848.228 kb on - strand at 848.246 kb on + strand at 848.261 kb on + strand at 848.269 kb on + strand at 848.305 kb on + strand at 848.306 kb on - strand at 848.319 kb on - strand at 848.392 kb on + strand at 848.392 kb on + strand at 848.399 kb on + strand at 848.440 kb on + strand at 848.441 kb on - strand at 848.501 kb on - strand, within CA265_RS03525 at 848.541 kb on - strand, within CA265_RS03525 at 848.551 kb on - strand, within CA265_RS03525 at 848.712 kb on - strand at 848.884 kb on - strand, within CA265_RS03525 at 849.031 kb on + strand, within CA265_RS03525 at 849.038 kb on - strand, within CA265_RS03525 at 849.143 kb on + strand at 849.143 kb on + strand at 849.236 kb on - strand at 849.236 kb on - strand at 849.282 kb on + strand at 849.359 kb on - strand, within CA265_RS03530 at 849.361 kb on - strand, within CA265_RS03530 at 849.480 kb on + strand, within CA265_RS03530 at 849.550 kb on + strand, within CA265_RS03530 at 849.616 kb on - strand, within CA265_RS03530 at 849.708 kb on - strand at 849.728 kb on + strand at 849.827 kb on + strand at 849.884 kb on - strand, within CA265_RS03535 at 849.930 kb on + strand, within CA265_RS03535 at 849.983 kb on + strand, within CA265_RS03535 at 849.997 kb on + strand, within CA265_RS03535 at 849.998 kb on - strand, within CA265_RS03535 at 850.037 kb on + strand, within CA265_RS03535 at 850.060 kb on + strand, within CA265_RS03535 at 850.103 kb on - strand, within CA265_RS03535 at 850.137 kb on + strand, within CA265_RS03535 at 850.155 kb on + strand, within CA265_RS03535 at 850.191 kb on + strand, within CA265_RS03535 at 850.191 kb on + strand, within CA265_RS03535 at 850.192 kb on - strand, within CA265_RS03535 at 850.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 847,392 + CA265_RS03515 0.45 -1.0 847,502 - -0.6 847,642 + -0.1 847,643 - +0.4 847,683 - CA265_RS03520 0.16 -0.8 847,713 - CA265_RS03520 0.22 +0.3 847,769 - CA265_RS03520 0.33 +0.0 847,785 - CA265_RS03520 0.36 -0.1 847,785 - CA265_RS03520 0.36 -0.4 847,847 + CA265_RS03520 0.48 +0.6 847,847 + CA265_RS03520 0.48 +0.4 847,909 - CA265_RS03520 0.59 -1.6 847,923 - CA265_RS03520 0.62 +0.3 847,940 - CA265_RS03520 0.65 -0.2 847,940 - CA265_RS03520 0.65 +0.4 847,982 - CA265_RS03520 0.73 -0.2 848,003 + CA265_RS03520 0.77 +0.2 848,003 + CA265_RS03520 0.77 -1.2 848,004 - CA265_RS03520 0.77 -0.7 848,004 - CA265_RS03520 0.77 +0.0 848,004 - CA265_RS03520 0.77 -0.2 848,020 - CA265_RS03520 0.80 +0.9 848,133 + -0.4 848,133 + -1.5 848,148 + +0.4 848,149 - +0.0 848,149 - -0.2 848,159 + -0.7 848,160 - +1.0 848,160 - +0.1 848,228 - +0.2 848,246 + -0.2 848,261 + +0.4 848,269 + -0.9 848,305 + -0.7 848,306 - -0.1 848,319 - -0.6 848,392 + -0.2 848,392 + -0.3 848,399 + +0.3 848,440 + -0.2 848,441 - -0.3 848,501 - CA265_RS03525 0.14 +0.6 848,541 - CA265_RS03525 0.19 -0.5 848,551 - CA265_RS03525 0.20 +2.4 848,712 - +0.3 848,884 - CA265_RS03525 0.60 +0.4 849,031 + CA265_RS03525 0.78 -1.5 849,038 - CA265_RS03525 0.79 +0.2 849,143 + -0.0 849,143 + +0.2 849,236 - +0.1 849,236 - -0.2 849,282 + -0.9 849,359 - CA265_RS03530 0.10 +0.2 849,361 - CA265_RS03530 0.11 +0.5 849,480 + CA265_RS03530 0.41 -0.6 849,550 + CA265_RS03530 0.59 -0.5 849,616 - CA265_RS03530 0.76 +0.4 849,708 - -0.3 849,728 + +0.0 849,827 + -0.8 849,884 - CA265_RS03535 0.18 +0.5 849,930 + CA265_RS03535 0.26 -0.2 849,983 + CA265_RS03535 0.36 -0.9 849,997 + CA265_RS03535 0.38 +0.3 849,998 - CA265_RS03535 0.38 -1.2 850,037 + CA265_RS03535 0.45 +0.0 850,060 + CA265_RS03535 0.49 -0.1 850,103 - CA265_RS03535 0.57 +0.1 850,137 + CA265_RS03535 0.63 -0.4 850,155 + CA265_RS03535 0.66 -0.8 850,191 + CA265_RS03535 0.72 -0.5 850,191 + CA265_RS03535 0.72 -0.5 850,192 - CA265_RS03535 0.73 -1.0 850,203 + -0.7
Or see this region's nucleotide sequence