Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03200 and CA265_RS03205 are separated by 86 nucleotides CA265_RS03205 and CA265_RS03210 are separated by 120 nucleotides CA265_RS03210 and CA265_RS03215 are separated by 106 nucleotides CA265_RS03215 and CA265_RS03220 are separated by 92 nucleotides
CA265_RS03200: CA265_RS03200 - short-chain dehydrogenase, at 788,164 to 788,928
_RS03200
CA265_RS03205: CA265_RS03205 - AraC family transcriptional regulator, at 789,015 to 789,422
_RS03205
CA265_RS03210: CA265_RS03210 - hypothetical protein, at 789,543 to 790,385
_RS03210
CA265_RS03215: CA265_RS03215 - mutarotase, at 790,492 to 791,175
_RS03215
CA265_RS03220: CA265_RS03220 - glycine--tRNA ligase, at 791,268 to 792,911
_RS03220
Position (kb) 789
790
791 Strain fitness (log2 ratio) -1
0
1 at 788.565 kb on + strand, within CA265_RS03200 at 788.566 kb on - strand, within CA265_RS03200 at 788.568 kb on - strand, within CA265_RS03200 at 788.646 kb on + strand, within CA265_RS03200 at 788.646 kb on + strand, within CA265_RS03200 at 788.697 kb on + strand, within CA265_RS03200 at 788.822 kb on + strand, within CA265_RS03200 at 788.827 kb on - strand, within CA265_RS03200 at 788.955 kb on - strand at 788.984 kb on - strand at 789.017 kb on - strand at 789.059 kb on - strand, within CA265_RS03205 at 789.130 kb on + strand, within CA265_RS03205 at 789.165 kb on - strand, within CA265_RS03205 at 789.165 kb on - strand, within CA265_RS03205 at 789.182 kb on + strand, within CA265_RS03205 at 789.254 kb on + strand, within CA265_RS03205 at 789.255 kb on - strand, within CA265_RS03205 at 789.255 kb on - strand, within CA265_RS03205 at 789.255 kb on - strand, within CA265_RS03205 at 789.261 kb on + strand, within CA265_RS03205 at 789.262 kb on - strand, within CA265_RS03205 at 789.284 kb on + strand, within CA265_RS03205 at 789.284 kb on + strand, within CA265_RS03205 at 789.452 kb on - strand at 789.497 kb on + strand at 789.498 kb on - strand at 789.515 kb on + strand at 789.522 kb on + strand at 789.545 kb on - strand at 789.672 kb on - strand, within CA265_RS03210 at 789.672 kb on - strand, within CA265_RS03210 at 789.684 kb on + strand, within CA265_RS03210 at 789.738 kb on - strand, within CA265_RS03210 at 789.794 kb on + strand, within CA265_RS03210 at 789.795 kb on - strand, within CA265_RS03210 at 789.875 kb on + strand, within CA265_RS03210 at 789.921 kb on - strand, within CA265_RS03210 at 789.925 kb on - strand, within CA265_RS03210 at 789.947 kb on + strand, within CA265_RS03210 at 789.950 kb on + strand, within CA265_RS03210 at 789.951 kb on - strand, within CA265_RS03210 at 789.973 kb on - strand, within CA265_RS03210 at 789.988 kb on + strand, within CA265_RS03210 at 790.123 kb on - strand, within CA265_RS03210 at 790.362 kb on + strand at 790.381 kb on + strand at 790.405 kb on - strand at 790.405 kb on - strand at 790.490 kb on + strand at 790.511 kb on - strand at 790.545 kb on - strand at 790.554 kb on + strand at 790.557 kb on - strand at 790.633 kb on - strand, within CA265_RS03215 at 790.637 kb on - strand, within CA265_RS03215 at 790.672 kb on - strand, within CA265_RS03215 at 790.692 kb on + strand, within CA265_RS03215 at 790.870 kb on - strand, within CA265_RS03215 at 790.878 kb on + strand, within CA265_RS03215 at 790.881 kb on - strand, within CA265_RS03215 at 790.881 kb on - strand, within CA265_RS03215 at 790.896 kb on + strand, within CA265_RS03215 at 790.904 kb on - strand, within CA265_RS03215 at 790.932 kb on + strand, within CA265_RS03215 at 790.933 kb on - strand, within CA265_RS03215 at 790.940 kb on - strand, within CA265_RS03215 at 790.973 kb on + strand, within CA265_RS03215 at 790.974 kb on - strand, within CA265_RS03215 at 791.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 788,565 + CA265_RS03200 0.52 -0.2 788,566 - CA265_RS03200 0.53 -0.6 788,568 - CA265_RS03200 0.53 -0.7 788,646 + CA265_RS03200 0.63 +0.7 788,646 + CA265_RS03200 0.63 -0.3 788,697 + CA265_RS03200 0.70 -0.6 788,822 + CA265_RS03200 0.86 +0.1 788,827 - CA265_RS03200 0.87 +0.2 788,955 - +1.2 788,984 - -0.2 789,017 - -0.3 789,059 - CA265_RS03205 0.11 +0.2 789,130 + CA265_RS03205 0.28 -1.3 789,165 - CA265_RS03205 0.37 +0.1 789,165 - CA265_RS03205 0.37 +0.1 789,182 + CA265_RS03205 0.41 +0.0 789,254 + CA265_RS03205 0.59 +0.4 789,255 - CA265_RS03205 0.59 +0.2 789,255 - CA265_RS03205 0.59 +1.3 789,255 - CA265_RS03205 0.59 +0.8 789,261 + CA265_RS03205 0.60 -0.1 789,262 - CA265_RS03205 0.61 -0.8 789,284 + CA265_RS03205 0.66 +0.3 789,284 + CA265_RS03205 0.66 +1.5 789,452 - +0.1 789,497 + -0.1 789,498 - -0.0 789,515 + -0.3 789,522 + +0.0 789,545 - +0.3 789,672 - CA265_RS03210 0.15 +0.2 789,672 - CA265_RS03210 0.15 +0.5 789,684 + CA265_RS03210 0.17 -0.1 789,738 - CA265_RS03210 0.23 +0.5 789,794 + CA265_RS03210 0.30 -0.5 789,795 - CA265_RS03210 0.30 +0.2 789,875 + CA265_RS03210 0.39 +0.2 789,921 - CA265_RS03210 0.45 +1.5 789,925 - CA265_RS03210 0.45 +0.6 789,947 + CA265_RS03210 0.48 +0.0 789,950 + CA265_RS03210 0.48 +0.7 789,951 - CA265_RS03210 0.48 +0.5 789,973 - CA265_RS03210 0.51 +0.1 789,988 + CA265_RS03210 0.53 +0.1 790,123 - CA265_RS03210 0.69 +0.6 790,362 + +1.3 790,381 + +0.1 790,405 - -0.3 790,405 - +0.2 790,490 + +0.1 790,511 - -0.5 790,545 - +0.2 790,554 + -0.9 790,557 - -0.1 790,633 - CA265_RS03215 0.21 -0.4 790,637 - CA265_RS03215 0.21 +0.3 790,672 - CA265_RS03215 0.26 +0.2 790,692 + CA265_RS03215 0.29 +0.5 790,870 - CA265_RS03215 0.55 -0.4 790,878 + CA265_RS03215 0.56 +0.3 790,881 - CA265_RS03215 0.57 +1.0 790,881 - CA265_RS03215 0.57 -0.6 790,896 + CA265_RS03215 0.59 -0.0 790,904 - CA265_RS03215 0.60 +0.5 790,932 + CA265_RS03215 0.64 +0.5 790,933 - CA265_RS03215 0.64 -0.3 790,940 - CA265_RS03215 0.65 +0.2 790,973 + CA265_RS03215 0.70 +0.0 790,974 - CA265_RS03215 0.70 -0.5 791,145 - -0.2
Or see this region's nucleotide sequence