Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02835 and CA265_RS02840 are separated by 14 nucleotides CA265_RS02840 and CA265_RS02845 are separated by 549 nucleotides CA265_RS02845 and CA265_RS02850 are separated by 39 nucleotides CA265_RS02850 and CA265_RS02855 are separated by 81 nucleotides CA265_RS02855 and CA265_RS02860 are separated by 81 nucleotides
CA265_RS02835: CA265_RS02835 - integrase, at 712,297 to 713,181
_RS02835
CA265_RS02840: CA265_RS02840 - 30S ribosomal protein S30, at 713,196 to 713,543
_RS02840
CA265_RS02845: CA265_RS02845 - tRNA-Thr, at 714,093 to 714,165
_RS02845
CA265_RS02850: CA265_RS02850 - tRNA-Tyr, at 714,205 to 714,287
_RS02850
CA265_RS02855: CA265_RS02855 - tRNA-Gly, at 714,369 to 714,444
_RS02855
CA265_RS02860: CA265_RS02860 - tRNA-Thr, at 714,526 to 714,597
_RS02860
Position (kb) 713
714 Strain fitness (log2 ratio) -1
0
1
2 at 712.247 kb on + strand at 712.256 kb on + strand at 712.325 kb on + strand at 712.326 kb on - strand at 712.359 kb on + strand at 712.399 kb on - strand, within CA265_RS02835 at 712.408 kb on - strand, within CA265_RS02835 at 712.434 kb on - strand, within CA265_RS02835 at 712.434 kb on - strand, within CA265_RS02835 at 712.457 kb on - strand, within CA265_RS02835 at 712.458 kb on + strand, within CA265_RS02835 at 712.504 kb on - strand, within CA265_RS02835 at 712.572 kb on + strand, within CA265_RS02835 at 712.598 kb on + strand, within CA265_RS02835 at 712.627 kb on - strand, within CA265_RS02835 at 712.845 kb on + strand, within CA265_RS02835 at 712.846 kb on - strand, within CA265_RS02835 at 712.848 kb on + strand, within CA265_RS02835 at 712.865 kb on - strand, within CA265_RS02835 at 712.975 kb on + strand, within CA265_RS02835 at 712.975 kb on + strand, within CA265_RS02835 at 713.033 kb on - strand, within CA265_RS02835 at 713.180 kb on - strand at 713.270 kb on + strand, within CA265_RS02840 at 713.275 kb on + strand, within CA265_RS02840 at 713.275 kb on + strand, within CA265_RS02840 at 713.275 kb on + strand, within CA265_RS02840 at 713.317 kb on + strand, within CA265_RS02840 at 713.472 kb on - strand, within CA265_RS02840 at 713.477 kb on + strand, within CA265_RS02840 at 713.538 kb on + strand at 713.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 712,247 + +0.6 712,256 + -0.3 712,325 + -0.9 712,326 - -0.7 712,359 + -0.0 712,399 - CA265_RS02835 0.12 -1.4 712,408 - CA265_RS02835 0.13 +0.7 712,434 - CA265_RS02835 0.15 -0.5 712,434 - CA265_RS02835 0.15 -0.9 712,457 - CA265_RS02835 0.18 -0.0 712,458 + CA265_RS02835 0.18 -0.8 712,504 - CA265_RS02835 0.23 -0.5 712,572 + CA265_RS02835 0.31 -0.7 712,598 + CA265_RS02835 0.34 -0.6 712,627 - CA265_RS02835 0.37 -0.2 712,845 + CA265_RS02835 0.62 -0.5 712,846 - CA265_RS02835 0.62 -0.9 712,848 + CA265_RS02835 0.62 +2.0 712,865 - CA265_RS02835 0.64 -1.7 712,975 + CA265_RS02835 0.77 -0.6 712,975 + CA265_RS02835 0.77 -0.1 713,033 - CA265_RS02835 0.83 -1.1 713,180 - -0.1 713,270 + CA265_RS02840 0.21 -0.1 713,275 + CA265_RS02840 0.23 +0.4 713,275 + CA265_RS02840 0.23 -0.8 713,275 + CA265_RS02840 0.23 +0.5 713,317 + CA265_RS02840 0.35 +1.1 713,472 - CA265_RS02840 0.79 +0.3 713,477 + CA265_RS02840 0.81 -0.0 713,538 + -1.0 713,865 - -0.3
Or see this region's nucleotide sequence