Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02740 and CA265_RS02745 are separated by 1 nucleotides CA265_RS02745 and CA265_RS02750 are separated by 16 nucleotides CA265_RS02750 and CA265_RS02755 are separated by 139 nucleotides
CA265_RS02740: CA265_RS02740 - radical SAM protein, at 689,734 to 691,128
_RS02740
CA265_RS02745: CA265_RS02745 - hypothetical protein, at 691,130 to 691,324
_RS02745
CA265_RS02750: CA265_RS02750 - hypothetical protein, at 691,341 to 691,535
_RS02750
CA265_RS02755: CA265_RS02755 - phenylalanine--tRNA ligase subunit beta, at 691,675 to 694,074
_RS02755
Position (kb) 691
692 Strain fitness (log2 ratio) -2
-1
0
1 at 690.203 kb on + strand, within CA265_RS02740 at 690.266 kb on + strand, within CA265_RS02740 at 690.270 kb on + strand, within CA265_RS02740 at 690.300 kb on + strand, within CA265_RS02740 at 690.326 kb on - strand, within CA265_RS02740 at 690.326 kb on - strand, within CA265_RS02740 at 690.389 kb on + strand, within CA265_RS02740 at 690.390 kb on - strand, within CA265_RS02740 at 690.452 kb on + strand, within CA265_RS02740 at 690.452 kb on + strand, within CA265_RS02740 at 690.453 kb on - strand, within CA265_RS02740 at 690.511 kb on - strand, within CA265_RS02740 at 690.511 kb on - strand, within CA265_RS02740 at 690.512 kb on + strand, within CA265_RS02740 at 690.528 kb on + strand, within CA265_RS02740 at 690.620 kb on + strand, within CA265_RS02740 at 690.621 kb on - strand, within CA265_RS02740 at 690.652 kb on + strand, within CA265_RS02740 at 690.677 kb on + strand, within CA265_RS02740 at 690.711 kb on + strand, within CA265_RS02740 at 690.718 kb on + strand, within CA265_RS02740 at 690.719 kb on - strand, within CA265_RS02740 at 690.843 kb on + strand, within CA265_RS02740 at 690.844 kb on - strand, within CA265_RS02740 at 690.852 kb on + strand, within CA265_RS02740 at 690.886 kb on - strand, within CA265_RS02740 at 690.936 kb on - strand, within CA265_RS02740 at 691.039 kb on - strand at 691.071 kb on + strand at 691.126 kb on + strand at 691.127 kb on - strand at 691.141 kb on - strand at 691.179 kb on + strand, within CA265_RS02745 at 691.199 kb on - strand, within CA265_RS02745 at 691.213 kb on + strand, within CA265_RS02745 at 691.237 kb on + strand, within CA265_RS02745 at 691.259 kb on - strand, within CA265_RS02745 at 691.270 kb on - strand, within CA265_RS02745 at 691.273 kb on + strand, within CA265_RS02745 at 691.273 kb on + strand, within CA265_RS02745 at 691.274 kb on - strand, within CA265_RS02745 at 691.335 kb on - strand at 691.357 kb on + strand at 691.357 kb on + strand at 691.358 kb on - strand at 691.358 kb on - strand at 691.359 kb on + strand at 691.457 kb on + strand, within CA265_RS02750 at 691.470 kb on - strand, within CA265_RS02750 at 691.470 kb on - strand, within CA265_RS02750 at 691.511 kb on - strand, within CA265_RS02750 at 691.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 690,203 + CA265_RS02740 0.34 -0.1 690,266 + CA265_RS02740 0.38 -0.2 690,270 + CA265_RS02740 0.38 -0.3 690,300 + CA265_RS02740 0.41 +0.0 690,326 - CA265_RS02740 0.42 -0.5 690,326 - CA265_RS02740 0.42 -0.2 690,389 + CA265_RS02740 0.47 -0.1 690,390 - CA265_RS02740 0.47 +0.1 690,452 + CA265_RS02740 0.51 +1.0 690,452 + CA265_RS02740 0.51 -0.1 690,453 - CA265_RS02740 0.52 +0.5 690,511 - CA265_RS02740 0.56 -0.1 690,511 - CA265_RS02740 0.56 -1.8 690,512 + CA265_RS02740 0.56 -0.1 690,528 + CA265_RS02740 0.57 -0.3 690,620 + CA265_RS02740 0.64 -2.0 690,621 - CA265_RS02740 0.64 +0.7 690,652 + CA265_RS02740 0.66 -0.4 690,677 + CA265_RS02740 0.68 -0.4 690,711 + CA265_RS02740 0.70 +0.1 690,718 + CA265_RS02740 0.71 -0.3 690,719 - CA265_RS02740 0.71 +1.3 690,843 + CA265_RS02740 0.79 -0.0 690,844 - CA265_RS02740 0.80 -0.3 690,852 + CA265_RS02740 0.80 -1.7 690,886 - CA265_RS02740 0.83 +0.2 690,936 - CA265_RS02740 0.86 -0.5 691,039 - -0.0 691,071 + +0.2 691,126 + +0.1 691,127 - +1.4 691,141 - -0.1 691,179 + CA265_RS02745 0.25 +0.5 691,199 - CA265_RS02745 0.35 -0.2 691,213 + CA265_RS02745 0.43 +0.7 691,237 + CA265_RS02745 0.55 +0.3 691,259 - CA265_RS02745 0.66 +0.5 691,270 - CA265_RS02745 0.72 -0.2 691,273 + CA265_RS02745 0.73 +0.3 691,273 + CA265_RS02745 0.73 +0.0 691,274 - CA265_RS02745 0.74 +0.3 691,335 - +0.6 691,357 + -0.5 691,357 + -2.5 691,358 - +0.3 691,358 - -0.3 691,359 + +1.1 691,457 + CA265_RS02750 0.59 -0.8 691,470 - CA265_RS02750 0.66 +0.1 691,470 - CA265_RS02750 0.66 -0.5 691,511 - CA265_RS02750 0.87 -0.7 691,554 + +0.6
Or see this region's nucleotide sequence