Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02545 and CA265_RS02550 are separated by 246 nucleotides CA265_RS02550 and CA265_RS02555 are separated by 59 nucleotides CA265_RS02555 and CA265_RS02560 are separated by 320 nucleotides
CA265_RS02545: CA265_RS02545 - hypothetical protein, at 638,679 to 641,642
_RS02545
CA265_RS02550: CA265_RS02550 - tRNA-Phe, at 641,889 to 641,961
_RS02550
CA265_RS02555: CA265_RS02555 - ATPase, at 642,021 to 642,470
_RS02555
CA265_RS02560: CA265_RS02560 - hypothetical protein, at 642,791 to 644,398
_RS02560
Position (kb) 641
642 Strain fitness (log2 ratio) -2
-1
0
1
2 at 640.941 kb on - strand, within CA265_RS02545 at 641.014 kb on + strand, within CA265_RS02545 at 641.087 kb on + strand, within CA265_RS02545 at 641.090 kb on + strand, within CA265_RS02545 at 641.237 kb on + strand, within CA265_RS02545 at 641.243 kb on + strand, within CA265_RS02545 at 641.244 kb on - strand, within CA265_RS02545 at 641.294 kb on + strand, within CA265_RS02545 at 641.462 kb on + strand at 641.468 kb on - strand at 641.505 kb on + strand at 641.505 kb on + strand at 641.506 kb on - strand at 641.584 kb on + strand at 641.589 kb on - strand at 641.589 kb on - strand at 641.696 kb on - strand at 641.696 kb on - strand at 641.696 kb on - strand at 641.743 kb on - strand at 641.743 kb on - strand at 641.867 kb on + strand at 641.897 kb on - strand, within CA265_RS02550 at 641.964 kb on + strand at 641.981 kb on - strand at 642.018 kb on + strand at 642.030 kb on + strand at 642.037 kb on + strand at 642.037 kb on + strand at 642.071 kb on + strand, within CA265_RS02555 at 642.208 kb on - strand, within CA265_RS02555 at 642.228 kb on + strand, within CA265_RS02555 at 642.386 kb on + strand, within CA265_RS02555 at 642.387 kb on - strand, within CA265_RS02555 at 642.391 kb on + strand, within CA265_RS02555 at 642.453 kb on - strand at 642.498 kb on + strand at 642.499 kb on - strand at 642.504 kb on + strand at 642.554 kb on + strand at 642.555 kb on - strand at 642.598 kb on - strand at 642.602 kb on - strand at 642.602 kb on - strand at 642.672 kb on + strand at 642.744 kb on - strand at 642.762 kb on - strand at 642.775 kb on + strand at 642.788 kb on + strand at 642.800 kb on - strand at 642.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 640,941 - CA265_RS02545 0.76 -0.2 641,014 + CA265_RS02545 0.79 +0.3 641,087 + CA265_RS02545 0.81 -0.2 641,090 + CA265_RS02545 0.81 -0.1 641,237 + CA265_RS02545 0.86 -0.5 641,243 + CA265_RS02545 0.87 -0.0 641,244 - CA265_RS02545 0.87 +0.0 641,294 + CA265_RS02545 0.88 -1.0 641,462 + +0.2 641,468 - -0.8 641,505 + +0.8 641,505 + -0.2 641,506 - +1.8 641,584 + -0.3 641,589 - -0.2 641,589 - -0.2 641,696 - +0.5 641,696 - +1.4 641,696 - -0.5 641,743 - -2.2 641,743 - +0.1 641,867 + +0.3 641,897 - CA265_RS02550 0.11 +0.3 641,964 + -0.8 641,981 - -0.2 642,018 + -0.2 642,030 + -0.9 642,037 + +0.2 642,037 + +0.7 642,071 + CA265_RS02555 0.11 -0.5 642,208 - CA265_RS02555 0.42 -1.3 642,228 + CA265_RS02555 0.46 -0.1 642,386 + CA265_RS02555 0.81 -0.3 642,387 - CA265_RS02555 0.81 -0.6 642,391 + CA265_RS02555 0.82 -0.1 642,453 - -1.5 642,498 + +0.1 642,499 - -1.8 642,504 + -2.6 642,554 + +0.1 642,555 - -0.6 642,598 - -0.5 642,602 - +0.1 642,602 - -1.1 642,672 + -0.2 642,744 - +0.2 642,762 - -0.1 642,775 + -0.0 642,788 + -2.0 642,800 - +1.0 642,834 + +1.8
Or see this region's nucleotide sequence