Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02120 and CA265_RS02125 are separated by 4 nucleotides CA265_RS02125 and CA265_RS02130 are separated by 6 nucleotides
CA265_RS02120: CA265_RS02120 - acyl transferase, at 531,654 to 532,652
_RS02120
CA265_RS02125: CA265_RS02125 - hypothetical protein, at 532,657 to 533,016
_RS02125
CA265_RS02130: CA265_RS02130 - penicillin acylase family protein, at 533,023 to 535,452
_RS02130
Position (kb) 532
533
534 Strain fitness (log2 ratio) -1
0
1 at 531.671 kb on + strand at 531.733 kb on - strand at 531.798 kb on - strand, within CA265_RS02120 at 531.904 kb on + strand, within CA265_RS02120 at 531.919 kb on - strand, within CA265_RS02120 at 531.934 kb on + strand, within CA265_RS02120 at 531.942 kb on - strand, within CA265_RS02120 at 532.076 kb on + strand, within CA265_RS02120 at 532.076 kb on + strand, within CA265_RS02120 at 532.094 kb on - strand, within CA265_RS02120 at 532.169 kb on + strand, within CA265_RS02120 at 532.174 kb on - strand, within CA265_RS02120 at 532.227 kb on - strand, within CA265_RS02120 at 532.228 kb on + strand, within CA265_RS02120 at 532.229 kb on - strand, within CA265_RS02120 at 532.327 kb on + strand, within CA265_RS02120 at 532.327 kb on + strand, within CA265_RS02120 at 532.357 kb on - strand, within CA265_RS02120 at 532.357 kb on - strand, within CA265_RS02120 at 532.385 kb on + strand, within CA265_RS02120 at 532.424 kb on + strand, within CA265_RS02120 at 532.513 kb on - strand, within CA265_RS02120 at 532.526 kb on - strand, within CA265_RS02120 at 532.558 kb on - strand at 532.615 kb on - strand at 532.622 kb on + strand at 532.622 kb on + strand at 532.623 kb on - strand at 532.623 kb on - strand at 532.649 kb on - strand at 532.649 kb on - strand at 532.658 kb on + strand at 532.718 kb on + strand, within CA265_RS02125 at 532.819 kb on + strand, within CA265_RS02125 at 532.831 kb on - strand, within CA265_RS02125 at 532.846 kb on + strand, within CA265_RS02125 at 532.847 kb on - strand, within CA265_RS02125 at 532.994 kb on - strand at 532.996 kb on + strand at 533.001 kb on + strand at 533.019 kb on + strand at 533.050 kb on - strand at 533.104 kb on - strand at 533.128 kb on - strand at 533.131 kb on - strand at 533.136 kb on - strand at 533.246 kb on - strand at 533.253 kb on + strand at 533.253 kb on + strand at 533.254 kb on - strand at 533.254 kb on - strand at 533.256 kb on + strand at 533.257 kb on - strand at 533.324 kb on - strand, within CA265_RS02130 at 533.387 kb on - strand, within CA265_RS02130 at 533.392 kb on - strand, within CA265_RS02130 at 533.431 kb on + strand, within CA265_RS02130 at 533.431 kb on + strand, within CA265_RS02130 at 533.569 kb on - strand, within CA265_RS02130 at 533.651 kb on + strand, within CA265_RS02130 at 533.652 kb on - strand, within CA265_RS02130 at 533.733 kb on + strand, within CA265_RS02130 at 533.741 kb on + strand, within CA265_RS02130 at 533.784 kb on + strand, within CA265_RS02130 at 533.784 kb on + strand, within CA265_RS02130 at 533.828 kb on + strand, within CA265_RS02130 at 533.847 kb on + strand, within CA265_RS02130 at 533.853 kb on - strand, within CA265_RS02130 at 533.853 kb on - strand, within CA265_RS02130 at 533.856 kb on - strand, within CA265_RS02130 at 533.919 kb on + strand, within CA265_RS02130 at 533.988 kb on + strand, within CA265_RS02130
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 531,671 + +0.0 531,733 - -0.2 531,798 - CA265_RS02120 0.14 +0.2 531,904 + CA265_RS02120 0.25 +0.0 531,919 - CA265_RS02120 0.27 -0.1 531,934 + CA265_RS02120 0.28 -0.3 531,942 - CA265_RS02120 0.29 -0.7 532,076 + CA265_RS02120 0.42 -1.4 532,076 + CA265_RS02120 0.42 -1.2 532,094 - CA265_RS02120 0.44 +1.6 532,169 + CA265_RS02120 0.52 -0.0 532,174 - CA265_RS02120 0.52 -0.2 532,227 - CA265_RS02120 0.57 +0.5 532,228 + CA265_RS02120 0.57 +0.2 532,229 - CA265_RS02120 0.58 -0.9 532,327 + CA265_RS02120 0.67 +1.0 532,327 + CA265_RS02120 0.67 +0.4 532,357 - CA265_RS02120 0.70 -0.5 532,357 - CA265_RS02120 0.70 -0.3 532,385 + CA265_RS02120 0.73 -1.0 532,424 + CA265_RS02120 0.77 -0.2 532,513 - CA265_RS02120 0.86 -0.3 532,526 - CA265_RS02120 0.87 -1.1 532,558 - -1.1 532,615 - -0.2 532,622 + -0.4 532,622 + -0.2 532,623 - +0.5 532,623 - -0.7 532,649 - -0.2 532,649 - -0.8 532,658 + -0.1 532,718 + CA265_RS02125 0.17 +0.2 532,819 + CA265_RS02125 0.45 +0.6 532,831 - CA265_RS02125 0.48 -0.1 532,846 + CA265_RS02125 0.53 +0.2 532,847 - CA265_RS02125 0.53 +0.1 532,994 - -0.4 532,996 + -0.1 533,001 + +0.2 533,019 + -0.1 533,050 - +0.1 533,104 - -0.3 533,128 - +0.0 533,131 - -0.6 533,136 - +0.3 533,246 - +0.3 533,253 + +0.6 533,253 + +0.4 533,254 - +0.4 533,254 - -0.3 533,256 + +0.3 533,257 - -1.0 533,324 - CA265_RS02130 0.12 -0.3 533,387 - CA265_RS02130 0.15 +0.4 533,392 - CA265_RS02130 0.15 +0.8 533,431 + CA265_RS02130 0.17 +0.5 533,431 + CA265_RS02130 0.17 +1.1 533,569 - CA265_RS02130 0.22 -0.3 533,651 + CA265_RS02130 0.26 -0.3 533,652 - CA265_RS02130 0.26 +1.3 533,733 + CA265_RS02130 0.29 +0.2 533,741 + CA265_RS02130 0.30 -0.0 533,784 + CA265_RS02130 0.31 +0.6 533,784 + CA265_RS02130 0.31 +0.5 533,828 + CA265_RS02130 0.33 +0.2 533,847 + CA265_RS02130 0.34 +0.9 533,853 - CA265_RS02130 0.34 +0.4 533,853 - CA265_RS02130 0.34 -0.6 533,856 - CA265_RS02130 0.34 -0.8 533,919 + CA265_RS02130 0.37 -0.6 533,988 + CA265_RS02130 0.40 -0.4
Or see this region's nucleotide sequence