Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02095 and CA265_RS02100 are separated by 18 nucleotides CA265_RS02100 and CA265_RS02105 are separated by 12 nucleotides CA265_RS02105 and CA265_RS02110 overlap by 4 nucleotides CA265_RS02110 and CA265_RS02115 are separated by 20 nucleotides CA265_RS02115 and CA265_RS02120 are separated by 3 nucleotides
CA265_RS02095: CA265_RS02095 - ABC transporter permease, at 528,629 to 529,843
_RS02095
CA265_RS02100: CA265_RS02100 - hypothetical protein, at 529,862 to 530,299
_RS02100
CA265_RS02105: CA265_RS02105 - hypothetical protein, at 530,312 to 530,746
_RS02105
CA265_RS02110: CA265_RS02110 - hypothetical protein, at 530,743 to 531,192
_RS02110
CA265_RS02115: CA265_RS02115 - Fur family transcriptional regulator, at 531,213 to 531,650
_RS02115
CA265_RS02120: CA265_RS02120 - acyl transferase, at 531,654 to 532,652
_RS02120
Position (kb) 530
531
532 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 529.743 kb on + strand at 529.793 kb on - strand at 529.793 kb on - strand at 529.803 kb on - strand at 529.813 kb on + strand at 529.878 kb on + strand at 529.900 kb on + strand at 529.909 kb on - strand, within CA265_RS02100 at 529.976 kb on + strand, within CA265_RS02100 at 530.037 kb on + strand, within CA265_RS02100 at 530.068 kb on + strand, within CA265_RS02100 at 530.068 kb on + strand, within CA265_RS02100 at 530.068 kb on + strand, within CA265_RS02100 at 530.069 kb on - strand, within CA265_RS02100 at 530.116 kb on + strand, within CA265_RS02100 at 530.159 kb on - strand, within CA265_RS02100 at 530.203 kb on + strand, within CA265_RS02100 at 530.280 kb on + strand at 530.370 kb on + strand, within CA265_RS02105 at 530.419 kb on - strand, within CA265_RS02105 at 530.488 kb on + strand, within CA265_RS02105 at 530.488 kb on + strand, within CA265_RS02105 at 530.497 kb on - strand, within CA265_RS02105 at 530.497 kb on - strand, within CA265_RS02105 at 530.516 kb on - strand, within CA265_RS02105 at 530.519 kb on - strand, within CA265_RS02105 at 530.527 kb on + strand, within CA265_RS02105 at 530.539 kb on + strand, within CA265_RS02105 at 530.540 kb on - strand, within CA265_RS02105 at 530.588 kb on + strand, within CA265_RS02105 at 530.625 kb on + strand, within CA265_RS02105 at 530.625 kb on + strand, within CA265_RS02105 at 530.626 kb on - strand, within CA265_RS02105 at 530.754 kb on - strand at 530.756 kb on - strand at 530.756 kb on - strand at 530.784 kb on + strand at 530.892 kb on + strand, within CA265_RS02110 at 530.892 kb on + strand, within CA265_RS02110 at 531.026 kb on - strand, within CA265_RS02110 at 531.089 kb on - strand, within CA265_RS02110 at 531.091 kb on - strand, within CA265_RS02110 at 531.191 kb on - strand at 531.198 kb on + strand at 531.199 kb on - strand at 531.207 kb on - strand at 531.224 kb on + strand at 531.334 kb on - strand, within CA265_RS02115 at 531.379 kb on - strand, within CA265_RS02115 at 531.379 kb on - strand, within CA265_RS02115 at 531.428 kb on - strand, within CA265_RS02115 at 531.450 kb on + strand, within CA265_RS02115 at 531.450 kb on + strand, within CA265_RS02115 at 531.451 kb on - strand, within CA265_RS02115 at 531.502 kb on + strand, within CA265_RS02115 at 531.502 kb on + strand, within CA265_RS02115 at 531.503 kb on - strand, within CA265_RS02115 at 531.510 kb on - strand, within CA265_RS02115 at 531.585 kb on - strand, within CA265_RS02115 at 531.643 kb on + strand at 531.643 kb on + strand at 531.643 kb on + strand at 531.655 kb on + strand at 531.671 kb on + strand at 531.733 kb on - strand at 531.798 kb on - strand, within CA265_RS02120 at 531.904 kb on + strand, within CA265_RS02120 at 531.919 kb on - strand, within CA265_RS02120 at 531.934 kb on + strand, within CA265_RS02120 at 531.942 kb on - strand, within CA265_RS02120 at 532.076 kb on + strand, within CA265_RS02120 at 532.076 kb on + strand, within CA265_RS02120 at 532.094 kb on - strand, within CA265_RS02120 at 532.169 kb on + strand, within CA265_RS02120 at 532.174 kb on - strand, within CA265_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 529,743 + +0.3 529,793 - -0.1 529,793 - +0.1 529,803 - +0.2 529,813 + +0.3 529,878 + +1.0 529,900 + +0.2 529,909 - CA265_RS02100 0.11 +0.6 529,976 + CA265_RS02100 0.26 +1.4 530,037 + CA265_RS02100 0.40 +3.7 530,068 + CA265_RS02100 0.47 -0.1 530,068 + CA265_RS02100 0.47 -0.8 530,068 + CA265_RS02100 0.47 -1.0 530,069 - CA265_RS02100 0.47 +0.5 530,116 + CA265_RS02100 0.58 -1.4 530,159 - CA265_RS02100 0.68 -0.1 530,203 + CA265_RS02100 0.78 -0.1 530,280 + +0.1 530,370 + CA265_RS02105 0.13 +0.1 530,419 - CA265_RS02105 0.25 +1.0 530,488 + CA265_RS02105 0.40 -0.8 530,488 + CA265_RS02105 0.40 -0.5 530,497 - CA265_RS02105 0.43 -0.9 530,497 - CA265_RS02105 0.43 +1.0 530,516 - CA265_RS02105 0.47 -0.1 530,519 - CA265_RS02105 0.48 +0.6 530,527 + CA265_RS02105 0.49 -1.3 530,539 + CA265_RS02105 0.52 -1.8 530,540 - CA265_RS02105 0.52 -0.2 530,588 + CA265_RS02105 0.63 +0.3 530,625 + CA265_RS02105 0.72 -0.3 530,625 + CA265_RS02105 0.72 -0.1 530,626 - CA265_RS02105 0.72 +0.4 530,754 - -1.8 530,756 - +0.4 530,756 - +0.4 530,784 + -1.2 530,892 + CA265_RS02110 0.33 +1.4 530,892 + CA265_RS02110 0.33 +0.4 531,026 - CA265_RS02110 0.63 +1.2 531,089 - CA265_RS02110 0.77 -0.1 531,091 - CA265_RS02110 0.77 +0.1 531,191 - -0.5 531,198 + -0.5 531,199 - +0.6 531,207 - -0.6 531,224 + -0.6 531,334 - CA265_RS02115 0.28 -1.3 531,379 - CA265_RS02115 0.38 -0.5 531,379 - CA265_RS02115 0.38 -0.9 531,428 - CA265_RS02115 0.49 -0.2 531,450 + CA265_RS02115 0.54 -1.3 531,450 + CA265_RS02115 0.54 -0.3 531,451 - CA265_RS02115 0.54 -0.1 531,502 + CA265_RS02115 0.66 -0.5 531,502 + CA265_RS02115 0.66 -1.2 531,503 - CA265_RS02115 0.66 +0.2 531,510 - CA265_RS02115 0.68 +0.2 531,585 - CA265_RS02115 0.85 -0.3 531,643 + -0.0 531,643 + -1.8 531,643 + -0.5 531,655 + -0.7 531,671 + +0.0 531,733 - -0.2 531,798 - CA265_RS02120 0.14 +0.2 531,904 + CA265_RS02120 0.25 +0.0 531,919 - CA265_RS02120 0.27 -0.1 531,934 + CA265_RS02120 0.28 -0.3 531,942 - CA265_RS02120 0.29 -0.7 532,076 + CA265_RS02120 0.42 -1.4 532,076 + CA265_RS02120 0.42 -1.2 532,094 - CA265_RS02120 0.44 +1.6 532,169 + CA265_RS02120 0.52 -0.0 532,174 - CA265_RS02120 0.52 -0.2
Or see this region's nucleotide sequence