Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01310

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01305 and CA265_RS01310 are separated by 37 nucleotidesCA265_RS01310 and CA265_RS01315 are separated by 659 nucleotides CA265_RS01305: CA265_RS01305 - hypothetical protein, at 327,506 to 329,851 _RS01305 CA265_RS01310: CA265_RS01310 - hypothetical protein, at 329,889 to 331,163 _RS01310 CA265_RS01315: CA265_RS01315 - alpha-1,3-galactosidase B, at 331,823 to 333,628 _RS01315 Position (kb) 329 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 328.910 kb on - strand, within CA265_RS01305at 328.959 kb on - strand, within CA265_RS01305at 328.987 kb on - strand, within CA265_RS01305at 329.014 kb on - strand, within CA265_RS01305at 329.033 kb on + strand, within CA265_RS01305at 329.039 kb on + strand, within CA265_RS01305at 329.084 kb on + strand, within CA265_RS01305at 329.146 kb on + strand, within CA265_RS01305at 329.147 kb on - strand, within CA265_RS01305at 329.150 kb on + strand, within CA265_RS01305at 329.161 kb on + strand, within CA265_RS01305at 329.194 kb on + strand, within CA265_RS01305at 329.259 kb on + strand, within CA265_RS01305at 329.269 kb on + strand, within CA265_RS01305at 329.305 kb on - strand, within CA265_RS01305at 329.447 kb on + strand, within CA265_RS01305at 329.539 kb on + strand, within CA265_RS01305at 329.598 kb on + strand, within CA265_RS01305at 329.710 kb on + strandat 329.710 kb on + strandat 329.710 kb on + strandat 329.711 kb on - strandat 329.739 kb on + strandat 329.816 kb on - strandat 329.824 kb on - strandat 329.850 kb on - strandat 329.898 kb on + strandat 329.920 kb on + strandat 329.936 kb on + strandat 330.174 kb on - strand, within CA265_RS01310at 330.174 kb on - strand, within CA265_RS01310at 330.176 kb on - strand, within CA265_RS01310at 330.176 kb on - strand, within CA265_RS01310at 330.176 kb on - strand, within CA265_RS01310at 330.178 kb on + strand, within CA265_RS01310at 330.178 kb on + strand, within CA265_RS01310at 330.179 kb on - strand, within CA265_RS01310at 330.362 kb on - strand, within CA265_RS01310at 330.368 kb on + strand, within CA265_RS01310at 330.369 kb on - strand, within CA265_RS01310at 330.369 kb on - strand, within CA265_RS01310at 330.425 kb on + strand, within CA265_RS01310at 330.435 kb on + strand, within CA265_RS01310at 330.446 kb on + strand, within CA265_RS01310at 330.446 kb on + strand, within CA265_RS01310at 330.447 kb on - strand, within CA265_RS01310at 330.447 kb on - strand, within CA265_RS01310at 330.449 kb on - strand, within CA265_RS01310at 330.479 kb on - strand, within CA265_RS01310at 330.479 kb on - strand, within CA265_RS01310at 330.515 kb on + strand, within CA265_RS01310at 330.519 kb on - strand, within CA265_RS01310at 330.519 kb on - strand, within CA265_RS01310at 330.651 kb on + strand, within CA265_RS01310at 330.651 kb on + strand, within CA265_RS01310at 330.689 kb on + strand, within CA265_RS01310at 330.735 kb on - strand, within CA265_RS01310at 330.799 kb on + strand, within CA265_RS01310at 330.805 kb on + strand, within CA265_RS01310at 330.805 kb on + strand, within CA265_RS01310at 330.868 kb on + strand, within CA265_RS01310at 330.869 kb on - strand, within CA265_RS01310at 330.869 kb on - strand, within CA265_RS01310at 330.870 kb on + strand, within CA265_RS01310at 330.891 kb on + strand, within CA265_RS01310at 330.908 kb on + strand, within CA265_RS01310at 330.922 kb on - strand, within CA265_RS01310at 330.979 kb on + strand, within CA265_RS01310at 330.983 kb on + strand, within CA265_RS01310at 330.983 kb on + strand, within CA265_RS01310at 330.984 kb on - strand, within CA265_RS01310at 330.988 kb on - strand, within CA265_RS01310at 331.079 kb on + strandat 331.079 kb on + strandat 331.080 kb on - strandat 331.128 kb on + strandat 331.129 kb on - strandat 331.129 kb on - strandat 331.216 kb on - strandat 331.218 kb on - strandat 331.254 kb on + strandat 331.255 kb on - strandat 331.259 kb on + strandat 331.259 kb on + strandat 331.298 kb on + strandat 331.298 kb on + strandat 331.304 kb on + strandat 331.304 kb on + strandat 331.306 kb on + strandat 331.344 kb on - strandat 331.344 kb on - strandat 331.473 kb on - strandat 331.477 kb on + strandat 331.484 kb on - strandat 331.507 kb on - strandat 331.547 kb on - strandat 331.573 kb on + strandat 331.601 kb on + strandat 331.646 kb on + strandat 331.673 kb on - strandat 331.680 kb on + strandat 331.708 kb on - strandat 331.723 kb on - strandat 331.728 kb on - strandat 331.730 kb on + strandat 331.767 kb on - strandat 331.778 kb on - strandat 331.778 kb on - strandat 331.784 kb on - strandat 331.825 kb on - strandat 331.889 kb on + strandat 331.957 kb on - strandat 331.957 kb on - strandat 331.961 kb on - strandat 331.961 kb on - strandat 332.086 kb on + strand, within CA265_RS01315at 332.106 kb on + strand, within CA265_RS01315at 332.107 kb on - strand, within CA265_RS01315at 332.158 kb on - strand, within CA265_RS01315at 332.158 kb on - strand, within CA265_RS01315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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328,910 - CA265_RS01305 0.60 +0.3
328,959 - CA265_RS01305 0.62 -0.3
328,987 - CA265_RS01305 0.63 +0.3
329,014 - CA265_RS01305 0.64 +0.2
329,033 + CA265_RS01305 0.65 -0.2
329,039 + CA265_RS01305 0.65 -0.6
329,084 + CA265_RS01305 0.67 -0.3
329,146 + CA265_RS01305 0.70 +0.0
329,147 - CA265_RS01305 0.70 -0.1
329,150 + CA265_RS01305 0.70 +0.1
329,161 + CA265_RS01305 0.71 -0.3
329,194 + CA265_RS01305 0.72 -0.5
329,259 + CA265_RS01305 0.75 -0.1
329,269 + CA265_RS01305 0.75 -0.4
329,305 - CA265_RS01305 0.77 -0.2
329,447 + CA265_RS01305 0.83 +0.6
329,539 + CA265_RS01305 0.87 -0.3
329,598 + CA265_RS01305 0.89 +0.6
329,710 + -1.0
329,710 + +0.6
329,710 + -0.5
329,711 - -1.9
329,739 + -1.0
329,816 - -0.7
329,824 - -0.4
329,850 - +0.7
329,898 + +1.1
329,920 + -0.4
329,936 + +0.4
330,174 - CA265_RS01310 0.22 +0.1
330,174 - CA265_RS01310 0.22 +0.6
330,176 - CA265_RS01310 0.23 -0.2
330,176 - CA265_RS01310 0.23 -1.0
330,176 - CA265_RS01310 0.23 +0.6
330,178 + CA265_RS01310 0.23 -0.0
330,178 + CA265_RS01310 0.23 +0.5
330,179 - CA265_RS01310 0.23 +0.1
330,362 - CA265_RS01310 0.37 -0.1
330,368 + CA265_RS01310 0.38 +0.4
330,369 - CA265_RS01310 0.38 +0.6
330,369 - CA265_RS01310 0.38 +0.6
330,425 + CA265_RS01310 0.42 +0.2
330,435 + CA265_RS01310 0.43 -0.9
330,446 + CA265_RS01310 0.44 +0.9
330,446 + CA265_RS01310 0.44 +0.2
330,447 - CA265_RS01310 0.44 -0.9
330,447 - CA265_RS01310 0.44 +0.3
330,449 - CA265_RS01310 0.44 +1.9
330,479 - CA265_RS01310 0.46 +0.0
330,479 - CA265_RS01310 0.46 +0.6
330,515 + CA265_RS01310 0.49 +0.2
330,519 - CA265_RS01310 0.49 +0.3
330,519 - CA265_RS01310 0.49 +0.1
330,651 + CA265_RS01310 0.60 +0.6
330,651 + CA265_RS01310 0.60 +0.0
330,689 + CA265_RS01310 0.63 -0.1
330,735 - CA265_RS01310 0.66 +0.2
330,799 + CA265_RS01310 0.71 -0.5
330,805 + CA265_RS01310 0.72 +0.7
330,805 + CA265_RS01310 0.72 +0.3
330,868 + CA265_RS01310 0.77 -0.3
330,869 - CA265_RS01310 0.77 -0.5
330,869 - CA265_RS01310 0.77 +0.4
330,870 + CA265_RS01310 0.77 +0.4
330,891 + CA265_RS01310 0.79 -1.2
330,908 + CA265_RS01310 0.80 -0.4
330,922 - CA265_RS01310 0.81 +1.8
330,979 + CA265_RS01310 0.85 +1.2
330,983 + CA265_RS01310 0.86 +1.1
330,983 + CA265_RS01310 0.86 +1.7
330,984 - CA265_RS01310 0.86 +0.3
330,988 - CA265_RS01310 0.86 +0.6
331,079 + -0.6
331,079 + +1.2
331,080 - -0.2
331,128 + +0.3
331,129 - +0.1
331,129 - +0.5
331,216 - -0.3
331,218 - +0.3
331,254 + +0.4
331,255 - +0.2
331,259 + +0.3
331,259 + -0.6
331,298 + +0.5
331,298 + +0.1
331,304 + +0.9
331,304 + -1.8
331,306 + +0.6
331,344 - -0.1
331,344 - +0.2
331,473 - -0.7
331,477 + +0.0
331,484 - -0.1
331,507 - +0.4
331,547 - -0.1
331,573 + +0.8
331,601 + +0.8
331,646 + +0.4
331,673 - +0.0
331,680 + +1.0
331,708 - -0.6
331,723 - -0.3
331,728 - -0.2
331,730 + -0.1
331,767 - +0.1
331,778 - +0.6
331,778 - -1.1
331,784 - +0.1
331,825 - +0.2
331,889 + +0.5
331,957 - -0.2
331,957 - +0.1
331,961 - +1.1
331,961 - -0.5
332,086 + CA265_RS01315 0.15 -0.4
332,106 + CA265_RS01315 0.16 +0.1
332,107 - CA265_RS01315 0.16 -0.8
332,158 - CA265_RS01315 0.19 +0.3
332,158 - CA265_RS01315 0.19 +0.2

Or see this region's nucleotide sequence