Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS01150

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS01145 and CA265_RS01150 are separated by 387 nucleotidesCA265_RS01150 and CA265_RS01155 are separated by 47 nucleotides CA265_RS01145: CA265_RS01145 - arylesterase, at 290,112 to 290,795 _RS01145 CA265_RS01150: CA265_RS01150 - hypothetical protein, at 291,183 to 291,383 _RS01150 CA265_RS01155: CA265_RS01155 - hypothetical protein, at 291,431 to 293,269 _RS01155 Position (kb) 291 292Strain fitness (log2 ratio) -2 -1 0 1 2at 290.255 kb on + strand, within CA265_RS01145at 290.323 kb on + strand, within CA265_RS01145at 290.369 kb on + strand, within CA265_RS01145at 290.370 kb on - strand, within CA265_RS01145at 290.370 kb on - strand, within CA265_RS01145at 290.426 kb on - strand, within CA265_RS01145at 290.430 kb on - strand, within CA265_RS01145at 290.440 kb on + strand, within CA265_RS01145at 290.444 kb on + strand, within CA265_RS01145at 290.489 kb on - strand, within CA265_RS01145at 290.508 kb on - strand, within CA265_RS01145at 290.607 kb on + strand, within CA265_RS01145at 290.689 kb on + strand, within CA265_RS01145at 290.689 kb on + strand, within CA265_RS01145at 290.725 kb on + strand, within CA265_RS01145at 290.725 kb on + strand, within CA265_RS01145at 290.726 kb on - strand, within CA265_RS01145at 290.776 kb on + strandat 290.777 kb on - strandat 290.793 kb on + strandat 290.793 kb on + strandat 290.793 kb on + strandat 290.798 kb on + strandat 290.799 kb on - strandat 290.836 kb on - strandat 290.863 kb on + strandat 290.864 kb on - strandat 290.866 kb on + strandat 290.896 kb on - strandat 290.896 kb on - strandat 290.948 kb on + strandat 290.948 kb on + strandat 290.971 kb on + strandat 290.972 kb on - strandat 291.017 kb on - strandat 291.045 kb on - strandat 291.062 kb on + strandat 291.116 kb on + strandat 291.116 kb on + strandat 291.116 kb on + strandat 291.189 kb on - strandat 291.212 kb on + strand, within CA265_RS01150at 291.266 kb on + strand, within CA265_RS01150at 291.267 kb on - strand, within CA265_RS01150at 291.268 kb on + strand, within CA265_RS01150at 291.268 kb on + strand, within CA265_RS01150at 291.269 kb on - strand, within CA265_RS01150at 291.318 kb on - strand, within CA265_RS01150at 291.401 kb on + strandat 291.424 kb on - strandat 291.428 kb on + strandat 291.466 kb on + strandat 291.467 kb on - strandat 291.584 kb on + strandat 291.592 kb on + strandat 291.610 kb on + strandat 291.610 kb on + strandat 291.611 kb on - strandat 291.612 kb on + strandat 291.612 kb on + strandat 291.612 kb on + strandat 291.613 kb on - strandat 291.613 kb on - strandat 291.665 kb on - strand, within CA265_RS01155at 291.699 kb on - strand, within CA265_RS01155at 291.710 kb on + strand, within CA265_RS01155at 291.711 kb on - strand, within CA265_RS01155at 291.711 kb on - strand, within CA265_RS01155at 291.723 kb on - strand, within CA265_RS01155at 291.820 kb on + strand, within CA265_RS01155at 291.875 kb on + strand, within CA265_RS01155at 291.900 kb on + strand, within CA265_RS01155at 291.942 kb on + strand, within CA265_RS01155at 291.942 kb on + strand, within CA265_RS01155at 292.019 kb on + strand, within CA265_RS01155at 292.019 kb on + strand, within CA265_RS01155at 292.020 kb on - strand, within CA265_RS01155at 292.020 kb on - strand, within CA265_RS01155at 292.084 kb on + strand, within CA265_RS01155at 292.085 kb on - strand, within CA265_RS01155at 292.085 kb on - strand, within CA265_RS01155at 292.116 kb on - strand, within CA265_RS01155at 292.130 kb on + strand, within CA265_RS01155at 292.164 kb on + strand, within CA265_RS01155at 292.165 kb on - strandat 292.165 kb on - strand, within CA265_RS01155at 292.181 kb on - strand, within CA265_RS01155at 292.209 kb on - strand, within CA265_RS01155at 292.222 kb on + strand, within CA265_RS01155at 292.296 kb on - strand, within CA265_RS01155at 292.346 kb on - strand, within CA265_RS01155

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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290,255 + CA265_RS01145 0.21 +0.0
290,323 + CA265_RS01145 0.31 -0.1
290,369 + CA265_RS01145 0.38 +0.2
290,370 - CA265_RS01145 0.38 +1.1
290,370 - CA265_RS01145 0.38 +0.3
290,426 - CA265_RS01145 0.46 +0.8
290,430 - CA265_RS01145 0.46 +0.3
290,440 + CA265_RS01145 0.48 +0.1
290,444 + CA265_RS01145 0.49 -0.6
290,489 - CA265_RS01145 0.55 -0.1
290,508 - CA265_RS01145 0.58 -0.3
290,607 + CA265_RS01145 0.72 -0.3
290,689 + CA265_RS01145 0.84 +0.3
290,689 + CA265_RS01145 0.84 +0.9
290,725 + CA265_RS01145 0.90 +0.0
290,725 + CA265_RS01145 0.90 +0.3
290,726 - CA265_RS01145 0.90 -0.4
290,776 + +1.0
290,777 - +0.5
290,793 + -1.5
290,793 + +0.9
290,793 + +0.5
290,798 + -0.4
290,799 - -0.4
290,836 - +0.1
290,863 + +0.8
290,864 - -1.1
290,866 + -0.4
290,896 - -0.2
290,896 - -0.5
290,948 + -0.5
290,948 + -0.2
290,971 + +0.2
290,972 - -0.2
291,017 - +1.0
291,045 - +0.5
291,062 + +0.7
291,116 + -0.5
291,116 + -0.3
291,116 + -1.2
291,189 - +0.1
291,212 + CA265_RS01150 0.14 +0.2
291,266 + CA265_RS01150 0.41 +0.3
291,267 - CA265_RS01150 0.42 +0.2
291,268 + CA265_RS01150 0.42 +0.4
291,268 + CA265_RS01150 0.42 +0.0
291,269 - CA265_RS01150 0.43 +0.3
291,318 - CA265_RS01150 0.67 +0.6
291,401 + +0.0
291,424 - +0.9
291,428 + +0.2
291,466 + -0.4
291,467 - -1.0
291,584 + -0.3
291,592 + +0.0
291,610 + +0.4
291,610 + -0.6
291,611 - +0.7
291,612 + -0.1
291,612 + -0.1
291,612 + -0.5
291,613 - +0.3
291,613 - +0.3
291,665 - CA265_RS01155 0.13 -0.2
291,699 - CA265_RS01155 0.15 -0.4
291,710 + CA265_RS01155 0.15 -0.0
291,711 - CA265_RS01155 0.15 -0.5
291,711 - CA265_RS01155 0.15 +0.5
291,723 - CA265_RS01155 0.16 -0.7
291,820 + CA265_RS01155 0.21 +0.8
291,875 + CA265_RS01155 0.24 +0.2
291,900 + CA265_RS01155 0.26 +0.3
291,942 + CA265_RS01155 0.28 -0.3
291,942 + CA265_RS01155 0.28 -0.5
292,019 + CA265_RS01155 0.32 +0.5
292,019 + CA265_RS01155 0.32 +2.4
292,020 - CA265_RS01155 0.32 -0.4
292,020 - CA265_RS01155 0.32 -1.3
292,084 + CA265_RS01155 0.36 -1.1
292,085 - CA265_RS01155 0.36 +0.2
292,085 - CA265_RS01155 0.36 -0.4
292,116 - CA265_RS01155 0.37 +0.1
292,130 + CA265_RS01155 0.38 -1.8
292,164 + CA265_RS01155 0.40 -0.2
292,165 - -0.5
292,165 - CA265_RS01155 0.40 -1.3
292,181 - CA265_RS01155 0.41 -0.1
292,209 - CA265_RS01155 0.42 +1.0
292,222 + CA265_RS01155 0.43 -0.2
292,296 - CA265_RS01155 0.47 +1.3
292,346 - CA265_RS01155 0.50 +1.1

Or see this region's nucleotide sequence