Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3952

Experiment: Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3951 and Ac3H11_3952 are separated by 9 nucleotidesAc3H11_3952 and Ac3H11_3953 are separated by 199 nucleotides Ac3H11_3951 - Aldose 1-epimerase (EC 5.1.3.3), at 174,845 to 175,957 _3951 Ac3H11_3952 - Permease of the drug/metabolite transporter (DMT) superfamily, at 175,967 to 176,896 _3952 Ac3H11_3953 - D-galactarate dehydratase (EC 4.2.1.42), at 177,096 to 178,673 _3953 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1at 175.053 kb on + strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.054 kb on - strand, within Ac3H11_3951at 175.200 kb on + strand, within Ac3H11_3951at 175.201 kb on - strand, within Ac3H11_3951at 175.201 kb on - strand, within Ac3H11_3951at 175.347 kb on + strand, within Ac3H11_3951at 175.348 kb on - strand, within Ac3H11_3951at 175.362 kb on - strand, within Ac3H11_3951at 175.456 kb on + strand, within Ac3H11_3951at 175.761 kb on + strand, within Ac3H11_3951at 175.779 kb on + strand, within Ac3H11_3951at 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.848 kb on + strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.849 kb on - strandat 175.892 kb on - strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.950 kb on + strandat 175.951 kb on - strandat 175.951 kb on - strandat 175.951 kb on - strandat 176.196 kb on + strand, within Ac3H11_3952at 176.197 kb on - strand, within Ac3H11_3952at 176.344 kb on - strand, within Ac3H11_3952at 176.509 kb on - strand, within Ac3H11_3952at 176.509 kb on - strand, within Ac3H11_3952at 176.581 kb on + strand, within Ac3H11_3952at 176.582 kb on - strand, within Ac3H11_3952at 176.584 kb on - strand, within Ac3H11_3952at 176.598 kb on + strand, within Ac3H11_3952at 176.598 kb on + strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.599 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.611 kb on - strand, within Ac3H11_3952at 176.620 kb on + strand, within Ac3H11_3952at 176.621 kb on - strand, within Ac3H11_3952at 176.621 kb on - strand, within Ac3H11_3952at 176.944 kb on - strandat 176.972 kb on + strandat 177.094 kb on + strandat 177.095 kb on - strandat 177.398 kb on + strand, within Ac3H11_3953at 177.398 kb on + strand, within Ac3H11_3953at 177.399 kb on - strand, within Ac3H11_3953at 177.433 kb on + strand, within Ac3H11_3953at 177.434 kb on - strand, within Ac3H11_3953at 177.434 kb on - strand, within Ac3H11_3953at 177.434 kb on - strand, within Ac3H11_3953at 177.591 kb on + strand, within Ac3H11_3953

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2 mM
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175,053 + Ac3H11_3951 0.19 -0.3
175,054 - Ac3H11_3951 0.19 -0.1
175,054 - Ac3H11_3951 0.19 -0.0
175,054 - Ac3H11_3951 0.19 -0.3
175,054 - Ac3H11_3951 0.19 +0.2
175,200 + Ac3H11_3951 0.32 -0.4
175,201 - Ac3H11_3951 0.32 +0.3
175,201 - Ac3H11_3951 0.32 +0.2
175,347 + Ac3H11_3951 0.45 -1.5
175,348 - Ac3H11_3951 0.45 -0.3
175,362 - Ac3H11_3951 0.46 +0.1
175,456 + Ac3H11_3951 0.55 -1.0
175,761 + Ac3H11_3951 0.82 -0.1
175,779 + Ac3H11_3951 0.84 -0.9
175,848 + +0.4
175,848 + +0.1
175,848 + -0.3
175,848 + +0.7
175,848 + +0.6
175,848 + -0.1
175,848 + +0.6
175,848 + -0.8
175,848 + -0.2
175,848 + -1.8
175,849 - -0.6
175,849 - +0.1
175,849 - -1.0
175,849 - -0.7
175,849 - -0.1
175,892 - +0.7
175,950 + -0.5
175,950 + -1.5
175,950 + -0.3
175,950 + +0.2
175,950 + -1.5
175,950 + -1.1
175,950 + +0.3
175,951 - -0.2
175,951 - +1.1
175,951 - -0.0
176,196 + Ac3H11_3952 0.25 +0.4
176,197 - Ac3H11_3952 0.25 -0.1
176,344 - Ac3H11_3952 0.41 +0.8
176,509 - Ac3H11_3952 0.58 +0.0
176,509 - Ac3H11_3952 0.58 -0.6
176,581 + Ac3H11_3952 0.66 -0.5
176,582 - Ac3H11_3952 0.66 +1.0
176,584 - Ac3H11_3952 0.66 +1.3
176,598 + Ac3H11_3952 0.68 -0.8
176,598 + Ac3H11_3952 0.68 -1.7
176,599 - Ac3H11_3952 0.68 -0.8
176,599 - Ac3H11_3952 0.68 -0.0
176,599 - Ac3H11_3952 0.68 -0.3
176,599 - Ac3H11_3952 0.68 +0.9
176,611 - Ac3H11_3952 0.69 +0.5
176,611 - Ac3H11_3952 0.69 -0.1
176,611 - Ac3H11_3952 0.69 -1.0
176,611 - Ac3H11_3952 0.69 +0.5
176,611 - Ac3H11_3952 0.69 +0.7
176,620 + Ac3H11_3952 0.70 +0.5
176,621 - Ac3H11_3952 0.70 +0.1
176,621 - Ac3H11_3952 0.70 -0.1
176,944 - -1.3
176,972 + -0.1
177,094 + -0.7
177,095 - -1.2
177,398 + Ac3H11_3953 0.19 -0.2
177,398 + Ac3H11_3953 0.19 -0.2
177,399 - Ac3H11_3953 0.19 +0.1
177,433 + Ac3H11_3953 0.21 -0.7
177,434 - Ac3H11_3953 0.21 -0.5
177,434 - Ac3H11_3953 0.21 +1.7
177,434 - Ac3H11_3953 0.21 +0.4
177,591 + Ac3H11_3953 0.31 +0.8

Or see this region's nucleotide sequence