Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19660 and ABZR87_RS19665 are separated by 1 nucleotides ABZR87_RS19665 and ABZR87_RS19670 are separated by 76 nucleotides ABZR87_RS19670 and ABZR87_RS19675 are separated by 179 nucleotides
ABZR87_RS19660: ABZR87_RS19660 - aspartate aminotransferase family protein, at 785,319 to 786,656
_RS19660
ABZR87_RS19665: ABZR87_RS19665 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 786,658 to 788,181
_RS19665
ABZR87_RS19670: ABZR87_RS19670 - cold-shock protein, at 788,258 to 788,464
_RS19670
ABZR87_RS19675: ABZR87_RS19675 - cold-shock protein, at 788,644 to 788,847
_RS19675
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -1
0
1
2 at 785.707 kb on - strand, within ABZR87_RS19660 at 785.707 kb on - strand, within ABZR87_RS19660 at 785.763 kb on + strand, within ABZR87_RS19660 at 785.864 kb on + strand, within ABZR87_RS19660 at 785.865 kb on - strand, within ABZR87_RS19660 at 785.865 kb on - strand, within ABZR87_RS19660 at 785.865 kb on - strand, within ABZR87_RS19660 at 786.034 kb on - strand, within ABZR87_RS19660 at 786.086 kb on - strand, within ABZR87_RS19660 at 786.285 kb on + strand, within ABZR87_RS19660 at 786.286 kb on - strand, within ABZR87_RS19660 at 786.291 kb on + strand, within ABZR87_RS19660 at 786.291 kb on + strand, within ABZR87_RS19660 at 786.291 kb on + strand, within ABZR87_RS19660 at 786.291 kb on + strand, within ABZR87_RS19660 at 786.291 kb on + strand, within ABZR87_RS19660 at 786.343 kb on - strand, within ABZR87_RS19660 at 786.508 kb on - strand, within ABZR87_RS19660 at 786.508 kb on - strand, within ABZR87_RS19660 at 786.553 kb on - strand at 786.632 kb on + strand at 786.633 kb on - strand at 786.649 kb on + strand at 786.649 kb on + strand at 786.649 kb on + strand at 786.650 kb on - strand at 786.650 kb on - strand at 786.650 kb on - strand at 786.650 kb on - strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.706 kb on + strand at 786.707 kb on - strand at 786.707 kb on - strand at 787.381 kb on + strand, within ABZR87_RS19665 at 787.381 kb on + strand, within ABZR87_RS19665 at 787.381 kb on + strand, within ABZR87_RS19665 at 787.381 kb on + strand, within ABZR87_RS19665 at 787.381 kb on + strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.382 kb on - strand, within ABZR87_RS19665 at 787.387 kb on + strand, within ABZR87_RS19665 at 787.388 kb on - strand, within ABZR87_RS19665 at 787.507 kb on + strand, within ABZR87_RS19665 at 787.690 kb on + strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.691 kb on - strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.822 kb on + strand, within ABZR87_RS19665 at 787.823 kb on - strand, within ABZR87_RS19665 at 787.823 kb on - strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 787.930 kb on + strand, within ABZR87_RS19665 at 788.074 kb on + strand at 788.098 kb on + strand at 788.107 kb on + strand at 788.108 kb on - strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.179 kb on + strand at 788.180 kb on - strand at 788.189 kb on + strand at 788.189 kb on + strand at 788.189 kb on + strand at 788.225 kb on - strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.261 kb on + strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.262 kb on - strand at 788.310 kb on - strand, within ABZR87_RS19670 at 788.380 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.430 kb on + strand, within ABZR87_RS19670 at 788.541 kb on + strand at 788.542 kb on - strand at 788.578 kb on + strand at 788.578 kb on + strand at 788.579 kb on - strand at 788.579 kb on - strand at 788.645 kb on + strand at 788.797 kb on - strand, within ABZR87_RS19675 at 788.841 kb on + strand at 788.841 kb on + strand at 788.841 kb on + strand at 788.842 kb on - strand at 788.873 kb on + strand at 788.893 kb on + strand at 788.893 kb on + strand at 788.894 kb on - strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.946 kb on + strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.947 kb on - strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.948 kb on + strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 788.949 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand at 789.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 785,707 - ABZR87_RS19660 0.29 +0.9 785,707 - ABZR87_RS19660 0.29 +0.5 785,763 + ABZR87_RS19660 0.33 -0.2 785,864 + ABZR87_RS19660 0.41 -1.0 785,865 - ABZR87_RS19660 0.41 +0.1 785,865 - ABZR87_RS19660 0.41 -0.7 785,865 - ABZR87_RS19660 0.41 -0.3 786,034 - ABZR87_RS19660 0.53 -0.1 786,086 - ABZR87_RS19660 0.57 +0.3 786,285 + ABZR87_RS19660 0.72 -0.3 786,286 - ABZR87_RS19660 0.72 -0.5 786,291 + ABZR87_RS19660 0.73 +0.4 786,291 + ABZR87_RS19660 0.73 +0.6 786,291 + ABZR87_RS19660 0.73 +0.5 786,291 + ABZR87_RS19660 0.73 -0.1 786,291 + ABZR87_RS19660 0.73 +0.3 786,343 - ABZR87_RS19660 0.77 +0.4 786,508 - ABZR87_RS19660 0.89 +1.8 786,508 - ABZR87_RS19660 0.89 -0.5 786,553 - +0.0 786,632 + +1.1 786,633 - -0.0 786,649 + -1.1 786,649 + -0.5 786,649 + +1.2 786,650 - +0.1 786,650 - +1.3 786,650 - +0.2 786,650 - +1.3 786,706 + +0.1 786,706 + -0.2 786,706 + +0.7 786,706 + +0.5 786,706 + +0.5 786,706 + -0.2 786,706 + +0.8 786,706 + +0.6 786,706 + -0.7 786,706 + +1.4 786,707 - +0.9 786,707 - -0.1 787,381 + ABZR87_RS19665 0.47 +0.3 787,381 + ABZR87_RS19665 0.47 +1.5 787,381 + ABZR87_RS19665 0.47 +0.6 787,381 + ABZR87_RS19665 0.47 -0.8 787,381 + ABZR87_RS19665 0.47 -0.2 787,382 - ABZR87_RS19665 0.48 +1.1 787,382 - ABZR87_RS19665 0.48 +0.8 787,382 - ABZR87_RS19665 0.48 +1.2 787,382 - ABZR87_RS19665 0.48 -0.1 787,382 - ABZR87_RS19665 0.48 +0.1 787,382 - ABZR87_RS19665 0.48 -1.3 787,382 - ABZR87_RS19665 0.48 +0.5 787,387 + ABZR87_RS19665 0.48 +0.4 787,388 - ABZR87_RS19665 0.48 +0.7 787,507 + ABZR87_RS19665 0.56 -0.3 787,690 + ABZR87_RS19665 0.68 -1.5 787,691 - ABZR87_RS19665 0.68 +0.7 787,691 - ABZR87_RS19665 0.68 +0.6 787,691 - ABZR87_RS19665 0.68 +0.9 787,822 + ABZR87_RS19665 0.76 -0.1 787,822 + ABZR87_RS19665 0.76 +0.5 787,822 + ABZR87_RS19665 0.76 +0.4 787,822 + ABZR87_RS19665 0.76 -0.5 787,822 + ABZR87_RS19665 0.76 +0.4 787,823 - ABZR87_RS19665 0.76 -0.1 787,823 - ABZR87_RS19665 0.76 +0.3 787,930 + ABZR87_RS19665 0.83 -0.1 787,930 + ABZR87_RS19665 0.83 -0.7 787,930 + ABZR87_RS19665 0.83 -1.0 788,074 + +0.1 788,098 + +0.3 788,107 + -0.8 788,108 - +1.6 788,179 + +0.2 788,179 + +0.0 788,179 + +0.2 788,179 + +0.5 788,180 - +0.1 788,189 + +0.1 788,189 + -1.0 788,189 + -0.7 788,225 - +0.9 788,261 + +1.2 788,261 + -0.8 788,261 + -1.1 788,261 + +0.9 788,262 - +1.2 788,262 - -0.9 788,262 - -1.1 788,310 - ABZR87_RS19670 0.25 -0.4 788,380 + ABZR87_RS19670 0.59 +0.5 788,430 + ABZR87_RS19670 0.83 -0.2 788,430 + ABZR87_RS19670 0.83 +0.3 788,430 + ABZR87_RS19670 0.83 +0.7 788,430 + ABZR87_RS19670 0.83 +0.0 788,541 + +0.6 788,542 - -0.3 788,578 + +0.5 788,578 + +1.4 788,579 - -0.1 788,579 - +0.2 788,645 + +0.0 788,797 - ABZR87_RS19675 0.75 -0.0 788,841 + +0.5 788,841 + +0.4 788,841 + +0.1 788,842 - +0.1 788,873 + -0.2 788,893 + +0.2 788,893 + -0.1 788,894 - -0.1 788,946 + -1.2 788,946 + -0.3 788,946 + +0.0 788,946 + -0.1 788,946 + -0.5 788,946 + -0.4 788,947 - -0.6 788,947 - +0.6 788,947 - -0.6 788,947 - +0.2 788,947 - +0.4 788,948 + +0.0 788,948 + +0.2 788,948 + +0.5 788,948 + +1.1 788,948 + -0.7 788,948 + -0.2 788,948 + -1.0 788,948 + -0.5 788,949 - +0.6 788,949 - +1.0 788,949 - -0.5 788,949 - +0.8 788,949 - -0.0 788,949 - +0.7 788,949 - +0.7 788,949 - +0.1 788,949 - +0.3 789,101 - -0.1 789,101 - -0.5 789,101 - -0.3
Or see this region's nucleotide sequence