Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17845 and ABZR87_RS17850 overlap by 8 nucleotides ABZR87_RS17850 and ABZR87_RS17855 are separated by 9 nucleotides ABZR87_RS17855 and ABZR87_RS17860 are separated by 28 nucleotides
ABZR87_RS17845: ABZR87_RS17845 - Crp/Fnr family transcriptional regulator, at 362,078 to 362,782
_RS17845
ABZR87_RS17850: ABZR87_RS17850 - 2-hydroxychromene-2-carboxylate isomerase, at 362,775 to 363,410
_RS17850
ABZR87_RS17855: ABZR87_RS17855 - 3-oxoacid CoA-transferase subunit B, at 363,420 to 364,094
_RS17855
ABZR87_RS17860: ABZR87_RS17860 - CoA-transferase, at 364,123 to 364,884
_RS17860
Position (kb) 363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 362.472 kb on + strand, within ABZR87_RS17845 at 362.725 kb on + strand at 363.077 kb on + strand, within ABZR87_RS17850 at 363.077 kb on + strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.078 kb on - strand, within ABZR87_RS17850 at 363.220 kb on + strand, within ABZR87_RS17850 at 363.676 kb on + strand, within ABZR87_RS17855 at 363.797 kb on - strand, within ABZR87_RS17855 at 363.797 kb on - strand, within ABZR87_RS17855 at 363.947 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.979 kb on + strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 363.980 kb on - strand, within ABZR87_RS17855 at 364.172 kb on + strand at 364.172 kb on + strand at 364.173 kb on - strand at 364.173 kb on - strand at 364.298 kb on + strand, within ABZR87_RS17860 at 364.298 kb on + strand, within ABZR87_RS17860 at 364.298 kb on + strand, within ABZR87_RS17860 at 364.298 kb on + strand, within ABZR87_RS17860 at 364.299 kb on - strand, within ABZR87_RS17860 at 364.299 kb on - strand, within ABZR87_RS17860 at 364.368 kb on + strand, within ABZR87_RS17860 at 364.368 kb on + strand, within ABZR87_RS17860 at 364.368 kb on + strand, within ABZR87_RS17860 at 364.613 kb on + strand, within ABZR87_RS17860 at 364.613 kb on + strand, within ABZR87_RS17860 at 364.613 kb on + strand, within ABZR87_RS17860 at 364.614 kb on - strand, within ABZR87_RS17860 at 364.614 kb on - strand, within ABZR87_RS17860 at 364.614 kb on - strand, within ABZR87_RS17860 at 364.614 kb on - strand, within ABZR87_RS17860 at 364.877 kb on + strand at 364.878 kb on - strand at 364.896 kb on + strand at 364.943 kb on + strand at 364.943 kb on + strand at 364.944 kb on - strand at 364.944 kb on - strand at 364.944 kb on - strand at 364.944 kb on - strand at 364.944 kb on - strand at 364.944 kb on - strand at 364.944 kb on - strand at 364.991 kb on + strand at 364.992 kb on - strand at 365.015 kb on + strand at 365.016 kb on - strand at 365.016 kb on - strand at 365.016 kb on - strand at 365.017 kb on + strand at 365.017 kb on + strand at 365.017 kb on + strand at 365.017 kb on + strand at 365.017 kb on + strand at 365.018 kb on - strand at 365.018 kb on - strand at 365.018 kb on - strand at 365.018 kb on - strand at 365.018 kb on - strand at 365.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 362,472 + ABZR87_RS17845 0.56 +0.4 362,725 + -0.5 363,077 + ABZR87_RS17850 0.47 +0.5 363,077 + ABZR87_RS17850 0.47 -0.1 363,078 - ABZR87_RS17850 0.48 -0.1 363,078 - ABZR87_RS17850 0.48 +0.2 363,078 - ABZR87_RS17850 0.48 +0.2 363,220 + ABZR87_RS17850 0.70 -1.5 363,676 + ABZR87_RS17855 0.38 +0.4 363,797 - ABZR87_RS17855 0.56 +0.1 363,797 - ABZR87_RS17855 0.56 -1.0 363,947 + ABZR87_RS17855 0.78 -0.1 363,979 + ABZR87_RS17855 0.83 +0.4 363,979 + ABZR87_RS17855 0.83 +0.2 363,979 + ABZR87_RS17855 0.83 -0.6 363,979 + ABZR87_RS17855 0.83 -0.2 363,979 + ABZR87_RS17855 0.83 +0.7 363,980 - ABZR87_RS17855 0.83 -0.2 363,980 - ABZR87_RS17855 0.83 +0.6 363,980 - ABZR87_RS17855 0.83 +0.6 363,980 - ABZR87_RS17855 0.83 +0.3 364,172 + -0.7 364,172 + +0.7 364,173 - -1.2 364,173 - -0.1 364,298 + ABZR87_RS17860 0.23 -0.8 364,298 + ABZR87_RS17860 0.23 -1.1 364,298 + ABZR87_RS17860 0.23 -0.2 364,298 + ABZR87_RS17860 0.23 +0.0 364,299 - ABZR87_RS17860 0.23 -0.1 364,299 - ABZR87_RS17860 0.23 -1.9 364,368 + ABZR87_RS17860 0.32 +0.3 364,368 + ABZR87_RS17860 0.32 -1.1 364,368 + ABZR87_RS17860 0.32 +0.0 364,613 + ABZR87_RS17860 0.64 +0.5 364,613 + ABZR87_RS17860 0.64 -0.8 364,613 + ABZR87_RS17860 0.64 +0.6 364,614 - ABZR87_RS17860 0.64 -0.5 364,614 - ABZR87_RS17860 0.64 -0.1 364,614 - ABZR87_RS17860 0.64 -0.6 364,614 - ABZR87_RS17860 0.64 +0.9 364,877 + -1.1 364,878 - +0.7 364,896 + +1.3 364,943 + -0.3 364,943 + -1.7 364,944 - -1.8 364,944 - -2.6 364,944 - -3.0 364,944 - -3.1 364,944 - -2.6 364,944 - -2.7 364,944 - -2.7 364,991 + +0.9 364,992 - -1.5 365,015 + +0.4 365,016 - -2.4 365,016 - -1.4 365,016 - -0.5 365,017 + -1.2 365,017 + -0.2 365,017 + -0.7 365,017 + -0.7 365,017 + -0.2 365,018 - -2.0 365,018 - -0.7 365,018 - -1.5 365,018 - -1.4 365,018 - -1.8 365,018 - -2.7
Or see this region's nucleotide sequence