Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17455 and ABZR87_RS17460 are separated by 171 nucleotides ABZR87_RS17460 and ABZR87_RS17465 are separated by 61 nucleotides
ABZR87_RS17455: ABZR87_RS17455 - AraC family transcriptional regulator, at 274,870 to 275,886
_RS17455
ABZR87_RS17460: ABZR87_RS17460 - acyl-CoA dehydrogenase, at 276,058 to 277,191
_RS17460
ABZR87_RS17465: ABZR87_RS17465 - AMP-binding protein, at 277,253 to 278,947
_RS17465
Position (kb) 276
277
278 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 275.109 kb on + strand, within ABZR87_RS17455 at 275.201 kb on + strand, within ABZR87_RS17455 at 275.398 kb on - strand, within ABZR87_RS17455 at 275.438 kb on + strand, within ABZR87_RS17455 at 275.439 kb on - strand, within ABZR87_RS17455 at 275.439 kb on - strand, within ABZR87_RS17455 at 275.727 kb on - strand, within ABZR87_RS17455 at 275.953 kb on - strand at 275.953 kb on - strand at 275.997 kb on + strand at 275.998 kb on - strand at 275.998 kb on - strand at 276.070 kb on + strand at 276.070 kb on + strand at 276.071 kb on - strand at 276.245 kb on - strand, within ABZR87_RS17460 at 276.245 kb on - strand, within ABZR87_RS17460 at 276.254 kb on - strand, within ABZR87_RS17460 at 276.263 kb on - strand, within ABZR87_RS17460 at 276.263 kb on - strand, within ABZR87_RS17460 at 276.386 kb on - strand, within ABZR87_RS17460 at 276.386 kb on - strand, within ABZR87_RS17460 at 276.848 kb on - strand, within ABZR87_RS17460 at 277.021 kb on + strand, within ABZR87_RS17460 at 277.022 kb on - strand, within ABZR87_RS17460 at 277.022 kb on - strand, within ABZR87_RS17460 at 277.084 kb on + strand at 277.096 kb on + strand at 277.141 kb on + strand at 277.141 kb on + strand at 277.142 kb on - strand at 277.142 kb on - strand at 277.142 kb on - strand at 277.189 kb on + strand at 277.190 kb on - strand at 277.190 kb on - strand at 277.190 kb on - strand at 277.267 kb on - strand at 277.267 kb on - strand at 277.389 kb on - strand at 277.389 kb on - strand at 277.717 kb on + strand, within ABZR87_RS17465 at 277.718 kb on - strand, within ABZR87_RS17465 at 277.718 kb on - strand, within ABZR87_RS17465 at 277.800 kb on - strand, within ABZR87_RS17465 at 277.862 kb on + strand, within ABZR87_RS17465 at 277.863 kb on - strand, within ABZR87_RS17465 at 277.947 kb on - strand, within ABZR87_RS17465 at 278.064 kb on - strand, within ABZR87_RS17465 at 278.070 kb on - strand, within ABZR87_RS17465 at 278.070 kb on - strand, within ABZR87_RS17465 at 278.116 kb on + strand, within ABZR87_RS17465 at 278.183 kb on + strand, within ABZR87_RS17465 at 278.184 kb on - strand, within ABZR87_RS17465
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 275,109 + ABZR87_RS17455 0.24 -2.2 275,201 + ABZR87_RS17455 0.33 -3.0 275,398 - ABZR87_RS17455 0.52 -2.4 275,438 + ABZR87_RS17455 0.56 -2.7 275,439 - ABZR87_RS17455 0.56 -2.6 275,439 - ABZR87_RS17455 0.56 -2.6 275,727 - ABZR87_RS17455 0.84 -0.4 275,953 - -2.4 275,953 - -0.9 275,997 + +0.9 275,998 - -1.9 275,998 - -3.7 276,070 + -2.0 276,070 + -1.2 276,071 - -3.5 276,245 - ABZR87_RS17460 0.16 -1.7 276,245 - ABZR87_RS17460 0.16 -3.3 276,254 - ABZR87_RS17460 0.17 -2.2 276,263 - ABZR87_RS17460 0.18 -3.5 276,263 - ABZR87_RS17460 0.18 -2.2 276,386 - ABZR87_RS17460 0.29 -2.7 276,386 - ABZR87_RS17460 0.29 -0.8 276,848 - ABZR87_RS17460 0.70 -1.8 277,021 + ABZR87_RS17460 0.85 -1.1 277,022 - ABZR87_RS17460 0.85 -2.3 277,022 - ABZR87_RS17460 0.85 +0.6 277,084 + -0.8 277,096 + -0.3 277,141 + -0.3 277,141 + +0.3 277,142 - -0.6 277,142 - -0.6 277,142 - -3.0 277,189 + -2.9 277,190 - -0.7 277,190 - -1.0 277,190 - -2.0 277,267 - -3.4 277,267 - -1.7 277,389 - -3.8 277,389 - +0.2 277,717 + ABZR87_RS17465 0.27 -2.6 277,718 - ABZR87_RS17465 0.27 -0.9 277,718 - ABZR87_RS17465 0.27 -3.3 277,800 - ABZR87_RS17465 0.32 -2.7 277,862 + ABZR87_RS17465 0.36 -1.2 277,863 - ABZR87_RS17465 0.36 -0.8 277,947 - ABZR87_RS17465 0.41 -0.9 278,064 - ABZR87_RS17465 0.48 -1.4 278,070 - ABZR87_RS17465 0.48 -1.2 278,070 - ABZR87_RS17465 0.48 -1.6 278,116 + ABZR87_RS17465 0.51 -0.4 278,183 + ABZR87_RS17465 0.55 +0.5 278,184 - ABZR87_RS17465 0.55 -3.4
Or see this region's nucleotide sequence