Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17445 and ABZR87_RS17450 are separated by 8 nucleotides ABZR87_RS17450 and ABZR87_RS17455 overlap by 25 nucleotides ABZR87_RS17455 and ABZR87_RS17460 are separated by 171 nucleotides
ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956
_RS17445
ABZR87_RS17450: ABZR87_RS17450 - LysR family transcriptional regulator, at 273,965 to 274,894
_RS17450
ABZR87_RS17455: ABZR87_RS17455 - AraC family transcriptional regulator, at 274,870 to 275,886
_RS17455
ABZR87_RS17460: ABZR87_RS17460 - acyl-CoA dehydrogenase, at 276,058 to 277,191
_RS17460
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 273.955 kb on - strand at 273.961 kb on + strand at 273.961 kb on + strand at 273.962 kb on - strand at 273.987 kb on - strand at 274.042 kb on + strand at 274.043 kb on - strand at 274.129 kb on - strand, within ABZR87_RS17450 at 274.587 kb on + strand, within ABZR87_RS17450 at 274.587 kb on + strand, within ABZR87_RS17450 at 274.587 kb on + strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.588 kb on - strand, within ABZR87_RS17450 at 274.766 kb on + strand, within ABZR87_RS17450 at 274.767 kb on - strand, within ABZR87_RS17450 at 274.767 kb on - strand, within ABZR87_RS17450 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.051 kb on + strand, within ABZR87_RS17455 at 275.109 kb on + strand, within ABZR87_RS17455 at 275.201 kb on + strand, within ABZR87_RS17455 at 275.398 kb on - strand, within ABZR87_RS17455 at 275.438 kb on + strand, within ABZR87_RS17455 at 275.439 kb on - strand, within ABZR87_RS17455 at 275.439 kb on - strand, within ABZR87_RS17455 at 275.727 kb on - strand, within ABZR87_RS17455 at 275.953 kb on - strand at 275.953 kb on - strand at 275.997 kb on + strand at 275.998 kb on - strand at 275.998 kb on - strand at 276.070 kb on + strand at 276.070 kb on + strand at 276.071 kb on - strand at 276.245 kb on - strand, within ABZR87_RS17460 at 276.245 kb on - strand, within ABZR87_RS17460 at 276.254 kb on - strand, within ABZR87_RS17460 at 276.263 kb on - strand, within ABZR87_RS17460 at 276.263 kb on - strand, within ABZR87_RS17460 at 276.386 kb on - strand, within ABZR87_RS17460 at 276.386 kb on - strand, within ABZR87_RS17460 at 276.848 kb on - strand, within ABZR87_RS17460
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 273,955 - -0.2 273,961 + -0.2 273,961 + +0.2 273,962 - -0.3 273,987 - +1.2 274,042 + -1.1 274,043 - +0.2 274,129 - ABZR87_RS17450 0.18 -0.3 274,587 + ABZR87_RS17450 0.67 -0.9 274,587 + ABZR87_RS17450 0.67 -0.1 274,587 + ABZR87_RS17450 0.67 +0.7 274,588 - ABZR87_RS17450 0.67 -0.6 274,588 - ABZR87_RS17450 0.67 +0.4 274,588 - ABZR87_RS17450 0.67 +0.5 274,588 - ABZR87_RS17450 0.67 +0.8 274,588 - ABZR87_RS17450 0.67 +0.1 274,588 - ABZR87_RS17450 0.67 +0.3 274,766 + ABZR87_RS17450 0.86 +1.3 274,767 - ABZR87_RS17450 0.86 -0.4 274,767 - ABZR87_RS17450 0.86 +1.0 275,051 + ABZR87_RS17455 0.18 -1.7 275,051 + ABZR87_RS17455 0.18 -1.9 275,051 + ABZR87_RS17455 0.18 -1.4 275,051 + ABZR87_RS17455 0.18 -2.1 275,051 + ABZR87_RS17455 0.18 -2.9 275,051 + ABZR87_RS17455 0.18 -2.7 275,109 + ABZR87_RS17455 0.24 -2.2 275,201 + ABZR87_RS17455 0.33 -3.0 275,398 - ABZR87_RS17455 0.52 -2.4 275,438 + ABZR87_RS17455 0.56 -2.7 275,439 - ABZR87_RS17455 0.56 -2.6 275,439 - ABZR87_RS17455 0.56 -2.6 275,727 - ABZR87_RS17455 0.84 -0.4 275,953 - -2.4 275,953 - -0.9 275,997 + +0.9 275,998 - -1.9 275,998 - -3.7 276,070 + -2.0 276,070 + -1.2 276,071 - -3.5 276,245 - ABZR87_RS17460 0.16 -1.7 276,245 - ABZR87_RS17460 0.16 -3.3 276,254 - ABZR87_RS17460 0.17 -2.2 276,263 - ABZR87_RS17460 0.18 -3.5 276,263 - ABZR87_RS17460 0.18 -2.2 276,386 - ABZR87_RS17460 0.29 -2.7 276,386 - ABZR87_RS17460 0.29 -0.8 276,848 - ABZR87_RS17460 0.70 -1.8
Or see this region's nucleotide sequence