Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14520 and ABZR87_RS14525 are separated by 82 nucleotides ABZR87_RS14525 and ABZR87_RS14530 are separated by 80 nucleotides
ABZR87_RS14520: ABZR87_RS14520 - aspartate-semialdehyde dehydrogenase, at 3,068,278 to 3,069,381
_RS14520
ABZR87_RS14525: ABZR87_RS14525 - hypothetical protein, at 3,069,464 to 3,069,640
_RS14525
ABZR87_RS14530: ABZR87_RS14530 - 3-isopropylmalate dehydrogenase, at 3,069,721 to 3,070,791
_RS14530
Position (kb)
3069
3070 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3069.465 kb on + strand at 3069.582 kb on - strand, within ABZR87_RS14525 at 3069.620 kb on + strand, within ABZR87_RS14525 at 3069.620 kb on + strand, within ABZR87_RS14525 at 3069.804 kb on - strand at 3069.965 kb on + strand, within ABZR87_RS14530 at 3069.965 kb on + strand, within ABZR87_RS14530 at 3069.965 kb on + strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3069.966 kb on - strand, within ABZR87_RS14530 at 3070.130 kb on + strand, within ABZR87_RS14530 at 3070.130 kb on + strand, within ABZR87_RS14530 at 3070.130 kb on + strand, within ABZR87_RS14530 at 3070.130 kb on + strand, within ABZR87_RS14530 at 3070.131 kb on - strand, within ABZR87_RS14530 at 3070.131 kb on - strand, within ABZR87_RS14530 at 3070.131 kb on - strand, within ABZR87_RS14530 at 3070.131 kb on - strand, within ABZR87_RS14530 at 3070.305 kb on - strand, within ABZR87_RS14530 at 3070.385 kb on + strand, within ABZR87_RS14530 at 3070.385 kb on + strand, within ABZR87_RS14530 at 3070.385 kb on + strand, within ABZR87_RS14530 at 3070.386 kb on - strand, within ABZR87_RS14530 at 3070.386 kb on - strand, within ABZR87_RS14530 at 3070.386 kb on - strand, within ABZR87_RS14530 at 3070.386 kb on - strand, within ABZR87_RS14530 at 3070.386 kb on - strand, within ABZR87_RS14530 at 3070.475 kb on + strand, within ABZR87_RS14530 at 3070.571 kb on + strand, within ABZR87_RS14530 at 3070.571 kb on + strand, within ABZR87_RS14530
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 3,069,465 + -0.7 3,069,582 - ABZR87_RS14525 0.67 +0.6 3,069,620 + ABZR87_RS14525 0.88 -0.4 3,069,620 + ABZR87_RS14525 0.88 -1.2 3,069,804 - -2.8 3,069,965 + ABZR87_RS14530 0.23 -1.8 3,069,965 + ABZR87_RS14530 0.23 -2.9 3,069,965 + ABZR87_RS14530 0.23 -2.1 3,069,966 - ABZR87_RS14530 0.23 -1.9 3,069,966 - ABZR87_RS14530 0.23 -3.4 3,069,966 - ABZR87_RS14530 0.23 -3.5 3,069,966 - ABZR87_RS14530 0.23 -2.4 3,069,966 - ABZR87_RS14530 0.23 -1.6 3,069,966 - ABZR87_RS14530 0.23 -3.3 3,069,966 - ABZR87_RS14530 0.23 -3.0 3,069,966 - ABZR87_RS14530 0.23 +0.0 3,070,130 + ABZR87_RS14530 0.38 -1.3 3,070,130 + ABZR87_RS14530 0.38 -3.3 3,070,130 + ABZR87_RS14530 0.38 -1.7 3,070,130 + ABZR87_RS14530 0.38 -3.7 3,070,131 - ABZR87_RS14530 0.38 -0.4 3,070,131 - ABZR87_RS14530 0.38 -1.3 3,070,131 - ABZR87_RS14530 0.38 -2.2 3,070,131 - ABZR87_RS14530 0.38 -2.8 3,070,305 - ABZR87_RS14530 0.55 -2.2 3,070,385 + ABZR87_RS14530 0.62 -1.2 3,070,385 + ABZR87_RS14530 0.62 -3.9 3,070,385 + ABZR87_RS14530 0.62 -2.3 3,070,386 - ABZR87_RS14530 0.62 -2.5 3,070,386 - ABZR87_RS14530 0.62 -3.3 3,070,386 - ABZR87_RS14530 0.62 -4.1 3,070,386 - ABZR87_RS14530 0.62 -1.9 3,070,386 - ABZR87_RS14530 0.62 -1.2 3,070,475 + ABZR87_RS14530 0.70 -3.1 3,070,571 + ABZR87_RS14530 0.79 -1.1 3,070,571 + ABZR87_RS14530 0.79 -0.9
Or see this region's nucleotide sequence