Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04795

Experiment: Trans-2-methyl-2-butenoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04790 and ABZR87_RS04795 overlap by 4 nucleotidesABZR87_RS04795 and ABZR87_RS04800 are separated by 9 nucleotidesABZR87_RS04800 and ABZR87_RS04805 overlap by 4 nucleotides ABZR87_RS04790: ABZR87_RS04790 - FAD-dependent oxidoreductase, at 1,005,160 to 1,006,305 _RS04790 ABZR87_RS04795: ABZR87_RS04795 - sulfur carrier protein ThiS, at 1,006,302 to 1,006,517 _RS04795 ABZR87_RS04800: ABZR87_RS04800 - thiazole synthase, at 1,006,527 to 1,007,354 _RS04800 ABZR87_RS04805: ABZR87_RS04805 - thiamine phosphate synthase, at 1,007,351 to 1,008,505 _RS04805 Position (kb) 1006 1007Strain fitness (log2 ratio) -2 -1 0 1at 1006.515 kb on + strandat 1006.515 kb on + strandat 1006.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C)
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1,006,515 + +0.4
1,006,515 + +0.2
1,006,535 + -1.8

Or see this region's nucleotide sequence