Experiment: Trans-2-methyl-2-butenoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02155 and ABZR87_RS02160 are separated by 1 nucleotides ABZR87_RS02160 and ABZR87_RS02165 are separated by 10 nucleotides ABZR87_RS02165 and ABZR87_RS02170 overlap by 4 nucleotides
ABZR87_RS02155: ABZR87_RS02155 - anthranilate phosphoribosyltransferase, at 461,693 to 462,730
_RS02155
ABZR87_RS02160: ABZR87_RS02160 - indole-3-glycerol phosphate synthase TrpC, at 462,732 to 463,535
_RS02160
ABZR87_RS02165: ABZR87_RS02165 - CYTH domain-containing protein, at 463,546 to 464,205
_RS02165
ABZR87_RS02170: ABZR87_RS02170 - uracil-DNA glycosylase, at 464,202 to 464,993
_RS02170
Position (kb) 463
464
465 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 462.605 kb on + strand, within ABZR87_RS02155 at 462.605 kb on + strand, within ABZR87_RS02155 at 462.606 kb on - strand, within ABZR87_RS02155 at 462.606 kb on - strand, within ABZR87_RS02155 at 462.730 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.731 kb on + strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.732 kb on - strand at 462.993 kb on + strand, within ABZR87_RS02160 at 462.993 kb on + strand, within ABZR87_RS02160 at 462.993 kb on + strand, within ABZR87_RS02160 at 463.063 kb on - strand, within ABZR87_RS02160 at 463.129 kb on - strand, within ABZR87_RS02160 at 463.137 kb on + strand, within ABZR87_RS02160 at 463.137 kb on + strand, within ABZR87_RS02160 at 463.137 kb on + strand, within ABZR87_RS02160 at 463.138 kb on - strand, within ABZR87_RS02160 at 463.138 kb on - strand, within ABZR87_RS02160 at 463.577 kb on + strand at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.664 kb on - strand, within ABZR87_RS02165 at 463.764 kb on + strand, within ABZR87_RS02165 at 463.764 kb on + strand, within ABZR87_RS02165 at 463.765 kb on - strand, within ABZR87_RS02165 at 463.765 kb on - strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.868 kb on + strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165
Per-strain Table
Position Strand Gene LocusTag Fraction Trans-2-methyl-2-butenoic (C) remove 462,605 + ABZR87_RS02155 0.88 -2.8 462,605 + ABZR87_RS02155 0.88 +1.1 462,606 - ABZR87_RS02155 0.88 -5.6 462,606 - ABZR87_RS02155 0.88 -3.0 462,730 + +0.2 462,731 + +0.8 462,731 + +0.2 462,731 + +0.1 462,731 + -0.5 462,731 + -0.8 462,732 - -3.1 462,732 - -1.5 462,732 - -3.3 462,732 - -2.3 462,732 - -1.9 462,732 - -1.2 462,732 - -0.1 462,732 - -1.4 462,732 - +0.8 462,732 - -3.4 462,732 - -3.1 462,993 + ABZR87_RS02160 0.32 -3.8 462,993 + ABZR87_RS02160 0.32 -4.4 462,993 + ABZR87_RS02160 0.32 -3.0 463,063 - ABZR87_RS02160 0.41 -0.2 463,129 - ABZR87_RS02160 0.49 -4.6 463,137 + ABZR87_RS02160 0.50 -2.6 463,137 + ABZR87_RS02160 0.50 -3.2 463,137 + ABZR87_RS02160 0.50 -1.4 463,138 - ABZR87_RS02160 0.50 -3.2 463,138 - ABZR87_RS02160 0.50 -2.6 463,577 + -0.3 463,661 - ABZR87_RS02165 0.17 +0.2 463,661 - ABZR87_RS02165 0.17 +1.0 463,661 - ABZR87_RS02165 0.17 -0.1 463,661 - ABZR87_RS02165 0.17 +0.9 463,663 + ABZR87_RS02165 0.18 +1.3 463,663 + ABZR87_RS02165 0.18 -0.3 463,664 - ABZR87_RS02165 0.18 -0.2 463,764 + ABZR87_RS02165 0.33 -0.9 463,764 + ABZR87_RS02165 0.33 +0.4 463,765 - ABZR87_RS02165 0.33 +1.8 463,765 - ABZR87_RS02165 0.33 -1.5 463,867 + ABZR87_RS02165 0.49 -0.9 463,867 + ABZR87_RS02165 0.49 -1.1 463,867 + ABZR87_RS02165 0.49 -0.3 463,867 + ABZR87_RS02165 0.49 -1.5 463,868 + ABZR87_RS02165 0.49 -0.2 463,868 - ABZR87_RS02165 0.49 +0.4 463,868 - ABZR87_RS02165 0.49 +0.1 463,868 - ABZR87_RS02165 0.49 +1.4
Or see this region's nucleotide sequence