Strain Fitness in Shewanella loihica PV-4 around Shew_2132

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2131 and Shew_2132 overlap by 4 nucleotidesShew_2132 and ddl are separated by 141 nucleotides Shew_2131: Shew_2131 - exodeoxyribonuclease V, alpha subunit (RefSeq), at 2,476,060 to 2,478,048 _2131 Shew_2132: Shew_2132 - hypothetical protein (RefSeq), at 2,478,045 to 2,478,968 _2132 Shew_2133: ddl - D-alanyl-alanine synthetase A (RefSeq), at 2,479,110 to 2,480,114 ddl Position (kb) 2478 2479Strain fitness (log2 ratio) -1 0 1at 2478.301 kb on - strand, within Shew_2132at 2478.399 kb on + strand, within Shew_2132at 2478.594 kb on + strand, within Shew_2132

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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2,478,301 - Shew_2132 0.28 +0.9
2,478,399 + Shew_2132 0.38 +0.2
2,478,594 + Shew_2132 0.59 +0.9

Or see this region's nucleotide sequence