Strain Fitness in Shewanella loihica PV-4 around Shew_1732

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1730 and Shew_1731 are separated by 262 nucleotidesShew_1731 and Shew_1732 are separated by 30 nucleotidesShew_1732 and Shew_1733 overlap by 4 nucleotidesShew_1733 and Shew_1734 are separated by 30 nucleotides Shew_1730: Shew_1730 - hypothetical protein (RefSeq), at 1,982,460 to 1,983,026 _1730 Shew_1731: Shew_1731 - histidine triad (HIT) protein (RefSeq), at 1,983,289 to 1,983,639 _1731 Shew_1732: Shew_1732 - hypothetical protein (RefSeq), at 1,983,670 to 1,984,167 _1732 Shew_1733: Shew_1733 - thioesterase superfamily protein (RefSeq), at 1,984,164 to 1,984,628 _1733 Shew_1734: Shew_1734 - hypothetical protein (RefSeq), at 1,984,659 to 1,985,048 _1734 Position (kb) 1983 1984 1985Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1982.956 kb on - strand, within Shew_1730at 1983.389 kb on - strand, within Shew_1731at 1983.660 kb on + strandat 1983.668 kb on - strandat 1983.806 kb on + strand, within Shew_1732at 1983.991 kb on + strand, within Shew_1732at 1984.120 kb on - strandat 1984.120 kb on - strandat 1984.449 kb on - strand, within Shew_1733at 1984.945 kb on + strand, within Shew_1734at 1984.945 kb on + strand, within Shew_1734

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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1,982,956 - Shew_1730 0.87 -0.5
1,983,389 - Shew_1731 0.28 -1.5
1,983,660 + +0.8
1,983,668 - -3.0
1,983,806 + Shew_1732 0.27 -4.0
1,983,991 + Shew_1732 0.64 -2.0
1,984,120 - -1.7
1,984,120 - -3.4
1,984,449 - Shew_1733 0.61 -1.4
1,984,945 + Shew_1734 0.73 -0.1
1,984,945 + Shew_1734 0.73 +0.2

Or see this region's nucleotide sequence