Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0845 and Shew_0846 are separated by 252 nucleotides Shew_0846 and Shew_0847 are separated by 12 nucleotides Shew_0847 and Shew_0848 are separated by 119 nucleotides Shew_0848 and Shew_0849 are separated by 92 nucleotides
Shew_0845: Shew_0845 - isochorismatase hydrolase (RefSeq), at 968,589 to 969,131
_0845
Shew_0846: Shew_0846 - nitrogen regulatory protein P-II (RefSeq), at 969,384 to 969,722
_0846
Shew_0847: Shew_0847 - Rh family protein/ammonium transporter (RefSeq), at 969,735 to 970,985
_0847
Shew_0848: Shew_0848 - hypothetical protein (RefSeq), at 971,105 to 971,431
_0848
Shew_0849: Shew_0849 - TPR repeat-containing protein (RefSeq), at 971,524 to 972,705
_0849
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1
2 at 968.762 kb on + strand, within Shew_0845 at 968.981 kb on + strand, within Shew_0845 at 969.098 kb on - strand at 969.379 kb on - strand at 969.447 kb on + strand, within Shew_0846 at 969.505 kb on + strand, within Shew_0846 at 969.564 kb on - strand, within Shew_0846 at 970.128 kb on - strand, within Shew_0847 at 970.337 kb on + strand, within Shew_0847 at 970.354 kb on + strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.383 kb on - strand, within Shew_0847 at 970.704 kb on - strand, within Shew_0847 at 970.805 kb on + strand, within Shew_0847 at 971.095 kb on - strand at 971.299 kb on - strand, within Shew_0848 at 971.501 kb on + strand at 971.509 kb on - strand at 971.795 kb on - strand, within Shew_0849 at 971.857 kb on - strand, within Shew_0849 at 971.984 kb on - strand, within Shew_0849
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 968,762 + Shew_0845 0.32 +0.4 968,981 + Shew_0845 0.72 +0.2 969,098 - -0.1 969,379 - -1.5 969,447 + Shew_0846 0.19 +0.1 969,505 + Shew_0846 0.36 +0.9 969,564 - Shew_0846 0.53 +0.8 970,128 - Shew_0847 0.31 +0.2 970,337 + Shew_0847 0.48 -0.1 970,354 + Shew_0847 0.49 +0.4 970,383 - Shew_0847 0.52 -1.7 970,383 - Shew_0847 0.52 +0.4 970,704 - Shew_0847 0.77 -0.6 970,805 + Shew_0847 0.86 -0.2 971,095 - +0.4 971,299 - Shew_0848 0.59 -0.7 971,501 + +0.7 971,509 - +1.8 971,795 - Shew_0849 0.23 +0.8 971,857 - Shew_0849 0.28 -0.7 971,984 - Shew_0849 0.39 -0.6
Or see this region's nucleotide sequence