Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0791 and Shew_0792 are separated by 197 nucleotides Shew_0792 and Shew_0793 are separated by 176 nucleotides Shew_0793 and Shew_0794 are separated by 112 nucleotides
Shew_0791: Shew_0791 - spermine synthase (RefSeq), at 903,429 to 904,172
_0791
Shew_0792: Shew_0792 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (RefSeq), at 904,370 to 904,939
_0792
Shew_0793: Shew_0793 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 905,116 to 906,681
_0793
Shew_0794: Shew_0794 - diguanylate cyclase (RefSeq), at 906,794 to 907,978
_0794
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 904.523 kb on - strand, within Shew_0792 at 904.561 kb on + strand, within Shew_0792 at 904.569 kb on - strand, within Shew_0792 at 904.722 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.809 kb on + strand, within Shew_0792 at 904.817 kb on - strand, within Shew_0792 at 904.877 kb on + strand, within Shew_0792 at 904.878 kb on + strand, within Shew_0792 at 904.892 kb on + strand at 904.892 kb on + strand at 905.437 kb on + strand, within Shew_0793 at 905.512 kb on - strand, within Shew_0793 at 905.622 kb on + strand, within Shew_0793 at 905.664 kb on + strand, within Shew_0793 at 905.849 kb on - strand, within Shew_0793 at 906.288 kb on - strand, within Shew_0793 at 906.720 kb on - strand at 906.720 kb on - strand at 907.226 kb on + strand, within Shew_0794 at 907.234 kb on - strand, within Shew_0794 at 907.355 kb on - strand, within Shew_0794 at 907.614 kb on + strand, within Shew_0794
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 904,523 - Shew_0792 0.27 -1.8 904,561 + Shew_0792 0.34 -2.3 904,569 - Shew_0792 0.35 -3.7 904,722 + Shew_0792 0.62 -2.8 904,809 + Shew_0792 0.77 -1.6 904,809 + Shew_0792 0.77 -0.4 904,817 - Shew_0792 0.78 -1.4 904,877 + Shew_0792 0.89 -2.9 904,878 + Shew_0792 0.89 -2.0 904,892 + -2.5 904,892 + +0.0 905,437 + Shew_0793 0.20 -2.0 905,512 - Shew_0793 0.25 -0.6 905,622 + Shew_0793 0.32 -0.2 905,664 + Shew_0793 0.35 -1.4 905,849 - Shew_0793 0.47 -0.9 906,288 - Shew_0793 0.75 +0.3 906,720 - +0.0 906,720 - +0.3 907,226 + Shew_0794 0.36 +0.4 907,234 - Shew_0794 0.37 +0.3 907,355 - Shew_0794 0.47 +0.2 907,614 + Shew_0794 0.69 +0.2
Or see this region's nucleotide sequence