Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0779 and Shew_0780 overlap by 4 nucleotides Shew_0780 and Shew_0781 are separated by 119 nucleotides
Shew_0779: Shew_0779 - aspartate kinase III (RefSeq), at 890,141 to 891,499
_0779
Shew_0780: Shew_0780 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 891,496 to 892,602
_0780
Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573
_0781
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1 at 891.072 kb on - strand, within Shew_0779 at 891.171 kb on + strand, within Shew_0779 at 891.199 kb on + strand, within Shew_0779 at 891.283 kb on + strand, within Shew_0779 at 891.517 kb on - strand at 891.642 kb on - strand, within Shew_0780 at 891.965 kb on + strand, within Shew_0780 at 892.016 kb on + strand, within Shew_0780 at 892.038 kb on + strand, within Shew_0780 at 892.046 kb on - strand, within Shew_0780 at 892.084 kb on - strand, within Shew_0780 at 892.089 kb on - strand, within Shew_0780 at 892.167 kb on - strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.381 kb on + strand, within Shew_0780 at 892.876 kb on - strand at 892.886 kb on - strand at 893.009 kb on + strand at 893.060 kb on + strand at 893.140 kb on - strand, within Shew_0781 at 893.256 kb on - strand, within Shew_0781 at 893.461 kb on - strand, within Shew_0781 at 893.471 kb on - strand, within Shew_0781
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 891,072 - Shew_0779 0.69 -0.0 891,171 + Shew_0779 0.76 -0.2 891,199 + Shew_0779 0.78 +0.3 891,283 + Shew_0779 0.84 +0.0 891,517 - -0.5 891,642 - Shew_0780 0.13 -0.2 891,965 + Shew_0780 0.42 -1.4 892,016 + Shew_0780 0.47 +0.3 892,038 + Shew_0780 0.49 +0.1 892,046 - Shew_0780 0.50 +0.9 892,084 - Shew_0780 0.53 -0.0 892,089 - Shew_0780 0.54 +0.0 892,167 - Shew_0780 0.61 -1.4 892,233 + Shew_0780 0.67 -0.1 892,233 + Shew_0780 0.67 +0.7 892,381 + Shew_0780 0.80 -0.1 892,876 - +0.3 892,886 - +0.1 893,009 + -0.3 893,060 + +1.4 893,140 - Shew_0781 0.11 -0.0 893,256 - Shew_0781 0.14 -1.0 893,461 - Shew_0781 0.19 +0.3 893,471 - Shew_0781 0.19 +0.3
Or see this region's nucleotide sequence