Strain Fitness in Shewanella loihica PV-4 around Shew_0703

Experiment: nitrite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0702 and Shew_0703 are separated by 183 nucleotidesShew_0703 and Shew_0704 are separated by 186 nucleotides Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866 _0702 Shew_0703: Shew_0703 - response regulator receiver protein (RefSeq), at 798,050 to 798,412 _0703 Shew_0704: Shew_0704 - hypothetical protein (RefSeq), at 798,599 to 799,195 _0704 Position (kb) 798 799Strain fitness (log2 ratio) -2 -1 0 1at 797.179 kb on + strand, within Shew_0702at 797.297 kb on - strand, within Shew_0702at 797.463 kb on - strand, within Shew_0702at 797.473 kb on - strand, within Shew_0702at 797.677 kb on - strand, within Shew_0702at 797.849 kb on - strandat 797.955 kb on + strandat 797.963 kb on - strandat 797.963 kb on - strandat 798.134 kb on - strand, within Shew_0703at 798.162 kb on + strand, within Shew_0703at 798.251 kb on + strand, within Shew_0703at 798.373 kb on + strand, within Shew_0703at 798.435 kb on + strandat 798.503 kb on + strandat 798.526 kb on + strandat 798.677 kb on + strand, within Shew_0704at 798.701 kb on - strand, within Shew_0704at 798.861 kb on - strand, within Shew_0704at 799.040 kb on - strand, within Shew_0704at 799.040 kb on - strand, within Shew_0704

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 200 mM
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797,179 + Shew_0702 0.36 -1.9
797,297 - Shew_0702 0.47 -0.3
797,463 - Shew_0702 0.63 +0.5
797,473 - Shew_0702 0.64 -0.3
797,677 - Shew_0702 0.82 +0.3
797,849 - +0.3
797,955 + +0.3
797,963 - -0.4
797,963 - +0.2
798,134 - Shew_0703 0.23 +0.8
798,162 + Shew_0703 0.31 -0.4
798,251 + Shew_0703 0.55 -1.7
798,373 + Shew_0703 0.89 -0.5
798,435 + +0.4
798,503 + -0.1
798,526 + -1.2
798,677 + Shew_0704 0.13 +0.6
798,701 - Shew_0704 0.17 +0.6
798,861 - Shew_0704 0.44 +0.0
799,040 - Shew_0704 0.74 -0.1
799,040 - Shew_0704 0.74 -0.2

Or see this region's nucleotide sequence