Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_541

Experiment: Benzalkonium Chloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_540 and Pf6N2E2_541 are separated by 147 nucleotidesPf6N2E2_541 and Pf6N2E2_542 are separated by 748 nucleotides Pf6N2E2_540 - Permease of the drug/metabolite transporter (DMT) superfamily, at 608,001 to 608,870 _540 Pf6N2E2_541 - Transcriptional regulator, Cro/CI family, at 609,018 to 609,581 _541 Pf6N2E2_542 - hypothetical protein, at 610,330 to 611,763 _542 Position (kb) 609 610Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.173 kb on + strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.174 kb on - strand, within Pf6N2E2_540at 608.596 kb on + strand, within Pf6N2E2_540at 608.596 kb on + strand, within Pf6N2E2_540at 608.597 kb on - strand, within Pf6N2E2_540at 608.597 kb on - strand, within Pf6N2E2_540at 608.985 kb on + strandat 608.985 kb on + strandat 608.986 kb on - strandat 608.986 kb on - strandat 609.015 kb on - strandat 609.017 kb on - strandat 609.220 kb on + strand, within Pf6N2E2_541at 609.387 kb on + strand, within Pf6N2E2_541at 609.388 kb on - strand, within Pf6N2E2_541at 609.429 kb on + strand, within Pf6N2E2_541at 609.429 kb on + strand, within Pf6N2E2_541at 609.429 kb on + strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.430 kb on - strand, within Pf6N2E2_541at 609.562 kb on + strandat 609.629 kb on + strandat 609.629 kb on + strandat 609.630 kb on - strandat 609.650 kb on + strandat 609.650 kb on + strandat 609.651 kb on - strandat 609.651 kb on - strandat 609.686 kb on + strandat 609.687 kb on - strandat 609.710 kb on - strandat 609.747 kb on + strandat 609.747 kb on + strandat 609.748 kb on - strandat 609.752 kb on + strandat 609.753 kb on - strandat 609.816 kb on + strandat 609.980 kb on + strandat 609.980 kb on + strandat 609.981 kb on - strandat 609.981 kb on - strandat 609.991 kb on - strandat 610.030 kb on + strandat 610.033 kb on - strandat 610.035 kb on + strandat 610.035 kb on + strandat 610.039 kb on + strandat 610.039 kb on + strandat 610.039 kb on + strandat 610.040 kb on - strandat 610.089 kb on + strandat 610.093 kb on + strandat 610.206 kb on + strandat 610.206 kb on + strandat 610.206 kb on + strandat 610.210 kb on + strandat 610.210 kb on + strandat 610.210 kb on + strandat 610.237 kb on + strandat 610.237 kb on + strandat 610.493 kb on - strand, within Pf6N2E2_542

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml
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608,173 + Pf6N2E2_540 0.20 -0.7
608,173 + Pf6N2E2_540 0.20 -0.4
608,173 + Pf6N2E2_540 0.20 -0.5
608,173 + Pf6N2E2_540 0.20 +0.5
608,173 + Pf6N2E2_540 0.20 -0.8
608,173 + Pf6N2E2_540 0.20 +0.5
608,173 + Pf6N2E2_540 0.20 +0.7
608,174 - Pf6N2E2_540 0.20 +0.7
608,174 - Pf6N2E2_540 0.20 +0.8
608,174 - Pf6N2E2_540 0.20 +0.1
608,174 - Pf6N2E2_540 0.20 -0.5
608,174 - Pf6N2E2_540 0.20 +0.2
608,174 - Pf6N2E2_540 0.20 +0.9
608,174 - Pf6N2E2_540 0.20 -0.1
608,174 - Pf6N2E2_540 0.20 +0.8
608,174 - Pf6N2E2_540 0.20 -0.6
608,174 - Pf6N2E2_540 0.20 +0.1
608,596 + Pf6N2E2_540 0.68 +0.1
608,596 + Pf6N2E2_540 0.68 +0.8
608,597 - Pf6N2E2_540 0.69 -0.2
608,597 - Pf6N2E2_540 0.69 -0.3
608,985 + +1.2
608,985 + +0.8
608,986 - +0.7
608,986 - -0.1
609,015 - -0.0
609,017 - -0.4
609,220 + Pf6N2E2_541 0.36 -0.2
609,387 + Pf6N2E2_541 0.65 -1.6
609,388 - Pf6N2E2_541 0.66 -0.5
609,429 + Pf6N2E2_541 0.73 -1.1
609,429 + Pf6N2E2_541 0.73 -0.8
609,429 + Pf6N2E2_541 0.73 -1.3
609,430 - Pf6N2E2_541 0.73 +0.7
609,430 - Pf6N2E2_541 0.73 -1.9
609,430 - Pf6N2E2_541 0.73 +0.2
609,430 - Pf6N2E2_541 0.73 -0.8
609,430 - Pf6N2E2_541 0.73 +0.3
609,430 - Pf6N2E2_541 0.73 +0.0
609,430 - Pf6N2E2_541 0.73 -0.9
609,430 - Pf6N2E2_541 0.73 -0.3
609,430 - Pf6N2E2_541 0.73 -1.8
609,562 + -2.9
609,629 + +0.7
609,629 + +0.3
609,630 - -0.8
609,650 + -1.3
609,650 + +0.8
609,651 - -0.4
609,651 - +0.9
609,686 + +0.8
609,687 - +0.5
609,710 - -0.3
609,747 + -0.3
609,747 + +1.6
609,748 - -1.6
609,752 + +0.3
609,753 - +1.1
609,816 + +0.6
609,980 + +2.3
609,980 + -1.0
609,981 - +0.3
609,981 - -0.9
609,991 - +0.4
610,030 + -1.0
610,033 - -0.6
610,035 + +0.4
610,035 + +0.3
610,039 + -0.1
610,039 + +0.1
610,039 + -0.3
610,040 - -0.4
610,089 + -0.8
610,093 + +0.0
610,206 + +0.2
610,206 + +0.9
610,206 + +0.1
610,210 + +0.2
610,210 + +0.3
610,210 + +0.1
610,237 + -0.1
610,237 + +0.4
610,493 - Pf6N2E2_542 0.11 +0.7

Or see this region's nucleotide sequence