Experiment: Benzalkonium Chloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4334 and Pf6N2E2_4335 overlap by 4 nucleotides Pf6N2E2_4335 and Pf6N2E2_4336 are separated by 81 nucleotides
Pf6N2E2_4334 - Uncharacterized protein ImpC, at 5,056,173 to 5,057,675
_4334
Pf6N2E2_4335 - Uncharacterized protein ImpB, at 5,057,672 to 5,058,178
_4335
Pf6N2E2_4336 - Uncharacterized protein ImpA, at 5,058,260 to 5,059,303
_4336
Position (kb) 5057
5058
5059 Strain fitness (log2 ratio) -1
0
1
2 at 5056.819 kb on + strand, within Pf6N2E2_4334 at 5056.840 kb on + strand, within Pf6N2E2_4334 at 5056.840 kb on + strand, within Pf6N2E2_4334 at 5056.840 kb on + strand, within Pf6N2E2_4334 at 5056.996 kb on + strand, within Pf6N2E2_4334 at 5057.167 kb on + strand, within Pf6N2E2_4334 at 5057.167 kb on + strand, within Pf6N2E2_4334 at 5057.167 kb on + strand, within Pf6N2E2_4334 at 5057.168 kb on - strand, within Pf6N2E2_4334 at 5057.171 kb on - strand, within Pf6N2E2_4334 at 5057.192 kb on - strand, within Pf6N2E2_4334 at 5057.227 kb on + strand, within Pf6N2E2_4334 at 5057.227 kb on + strand, within Pf6N2E2_4334 at 5057.227 kb on + strand, within Pf6N2E2_4334 at 5057.228 kb on - strand, within Pf6N2E2_4334 at 5057.228 kb on - strand, within Pf6N2E2_4334 at 5057.362 kb on + strand, within Pf6N2E2_4334 at 5057.363 kb on - strand, within Pf6N2E2_4334 at 5057.657 kb on + strand at 5057.657 kb on + strand at 5057.657 kb on + strand at 5057.658 kb on - strand at 5057.658 kb on - strand at 5057.658 kb on - strand at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.778 kb on + strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5057.779 kb on - strand, within Pf6N2E2_4335 at 5058.056 kb on + strand, within Pf6N2E2_4335 at 5058.099 kb on + strand, within Pf6N2E2_4335 at 5058.261 kb on + strand at 5058.262 kb on - strand at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.408 kb on + strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.409 kb on - strand, within Pf6N2E2_4336 at 5058.411 kb on + strand, within Pf6N2E2_4336 at 5058.412 kb on - strand, within Pf6N2E2_4336 at 5058.412 kb on - strand, within Pf6N2E2_4336 at 5058.412 kb on - strand, within Pf6N2E2_4336 at 5058.487 kb on + strand, within Pf6N2E2_4336 at 5058.487 kb on + strand, within Pf6N2E2_4336 at 5058.996 kb on + strand, within Pf6N2E2_4336 at 5058.996 kb on + strand, within Pf6N2E2_4336 at 5058.996 kb on + strand, within Pf6N2E2_4336 at 5058.997 kb on - strand, within Pf6N2E2_4336 at 5058.997 kb on - strand, within Pf6N2E2_4336
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.016 mg/ml remove 5,056,819 + Pf6N2E2_4334 0.43 +0.7 5,056,840 + Pf6N2E2_4334 0.44 +0.6 5,056,840 + Pf6N2E2_4334 0.44 +0.2 5,056,840 + Pf6N2E2_4334 0.44 +0.2 5,056,996 + Pf6N2E2_4334 0.55 +0.8 5,057,167 + Pf6N2E2_4334 0.66 -1.4 5,057,167 + Pf6N2E2_4334 0.66 -0.2 5,057,167 + Pf6N2E2_4334 0.66 -1.3 5,057,168 - Pf6N2E2_4334 0.66 +0.1 5,057,171 - Pf6N2E2_4334 0.66 +0.6 5,057,192 - Pf6N2E2_4334 0.68 +0.7 5,057,227 + Pf6N2E2_4334 0.70 -0.1 5,057,227 + Pf6N2E2_4334 0.70 -0.3 5,057,227 + Pf6N2E2_4334 0.70 -0.4 5,057,228 - Pf6N2E2_4334 0.70 +1.3 5,057,228 - Pf6N2E2_4334 0.70 +0.2 5,057,362 + Pf6N2E2_4334 0.79 +0.1 5,057,363 - Pf6N2E2_4334 0.79 +0.3 5,057,657 + +0.5 5,057,657 + +0.8 5,057,657 + -0.5 5,057,658 - +0.7 5,057,658 - +0.4 5,057,658 - +0.2 5,057,778 + Pf6N2E2_4335 0.21 +0.2 5,057,778 + Pf6N2E2_4335 0.21 +0.4 5,057,778 + Pf6N2E2_4335 0.21 +0.4 5,057,778 + Pf6N2E2_4335 0.21 +2.3 5,057,778 + Pf6N2E2_4335 0.21 +0.3 5,057,778 + Pf6N2E2_4335 0.21 +0.9 5,057,778 + Pf6N2E2_4335 0.21 +1.3 5,057,778 + Pf6N2E2_4335 0.21 +0.6 5,057,778 + Pf6N2E2_4335 0.21 +0.6 5,057,779 - Pf6N2E2_4335 0.21 +0.7 5,057,779 - Pf6N2E2_4335 0.21 +0.9 5,057,779 - Pf6N2E2_4335 0.21 -0.7 5,057,779 - Pf6N2E2_4335 0.21 -0.7 5,057,779 - Pf6N2E2_4335 0.21 +1.7 5,058,056 + Pf6N2E2_4335 0.76 +1.3 5,058,099 + Pf6N2E2_4335 0.84 +0.8 5,058,261 + -0.1 5,058,262 - -0.7 5,058,408 + Pf6N2E2_4336 0.14 +0.6 5,058,408 + Pf6N2E2_4336 0.14 +0.5 5,058,408 + Pf6N2E2_4336 0.14 +0.3 5,058,408 + Pf6N2E2_4336 0.14 -0.5 5,058,409 - Pf6N2E2_4336 0.14 -0.4 5,058,409 - Pf6N2E2_4336 0.14 +0.2 5,058,409 - Pf6N2E2_4336 0.14 -1.1 5,058,409 - Pf6N2E2_4336 0.14 +0.9 5,058,409 - Pf6N2E2_4336 0.14 +1.2 5,058,411 + Pf6N2E2_4336 0.14 +0.8 5,058,412 - Pf6N2E2_4336 0.15 -0.3 5,058,412 - Pf6N2E2_4336 0.15 -0.4 5,058,412 - Pf6N2E2_4336 0.15 +0.6 5,058,487 + Pf6N2E2_4336 0.22 +0.6 5,058,487 + Pf6N2E2_4336 0.22 -0.0 5,058,996 + Pf6N2E2_4336 0.70 +1.0 5,058,996 + Pf6N2E2_4336 0.70 +1.1 5,058,996 + Pf6N2E2_4336 0.70 +0.7 5,058,997 - Pf6N2E2_4336 0.71 -0.5 5,058,997 - Pf6N2E2_4336 0.71 +0.1
Or see this region's nucleotide sequence