Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05075 and MMP_RS05080 are separated by 13 nucleotides MMP_RS05080 and MMP_RS05085 are separated by 14 nucleotides MMP_RS05085 and MMP_RS05090 are separated by 10 nucleotides
MMP_RS05075: MMP_RS05075 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 964,809 to 966,182
_RS05075
MMP_RS05080: MMP_RS05080 - acetyl-CoA decarbonylase/synthase complex subunit delta, at 966,196 to 967,350
_RS05080
MMP_RS05085: MMP_RS05085 - AAA family ATPase, at 967,365 to 968,117
_RS05085
MMP_RS05090: MMP_RS05090 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta, at 968,128 to 969,501
_RS05090
Position (kb) 966
967
968 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 965.209 kb on - strand, within MMP_RS05075 at 965.252 kb on - strand, within MMP_RS05075 at 965.256 kb on - strand, within MMP_RS05075 at 965.265 kb on - strand, within MMP_RS05075 at 965.439 kb on + strand, within MMP_RS05075 at 965.477 kb on + strand, within MMP_RS05075 at 965.496 kb on - strand, within MMP_RS05075 at 965.496 kb on - strand, within MMP_RS05075 at 965.497 kb on + strand, within MMP_RS05075 at 965.497 kb on + strand, within MMP_RS05075 at 965.598 kb on - strand, within MMP_RS05075 at 965.621 kb on - strand, within MMP_RS05075 at 965.639 kb on + strand, within MMP_RS05075 at 965.790 kb on - strand, within MMP_RS05075 at 965.791 kb on + strand, within MMP_RS05075 at 965.890 kb on + strand, within MMP_RS05075 at 965.890 kb on + strand, within MMP_RS05075 at 965.890 kb on + strand, within MMP_RS05075 at 965.917 kb on - strand, within MMP_RS05075 at 965.918 kb on + strand, within MMP_RS05075 at 965.918 kb on + strand, within MMP_RS05075 at 965.921 kb on + strand, within MMP_RS05075 at 965.936 kb on - strand, within MMP_RS05075 at 965.936 kb on - strand, within MMP_RS05075 at 965.937 kb on + strand, within MMP_RS05075 at 965.938 kb on - strand, within MMP_RS05075 at 965.939 kb on + strand, within MMP_RS05075 at 965.939 kb on + strand, within MMP_RS05075 at 965.940 kb on - strand, within MMP_RS05075 at 965.941 kb on + strand, within MMP_RS05075 at 965.941 kb on + strand, within MMP_RS05075 at 965.941 kb on + strand, within MMP_RS05075 at 966.017 kb on - strand, within MMP_RS05075 at 966.047 kb on - strand at 966.108 kb on + strand at 966.161 kb on - strand at 966.161 kb on - strand at 966.209 kb on + strand at 966.222 kb on - strand at 966.223 kb on + strand at 966.252 kb on + strand at 966.313 kb on - strand, within MMP_RS05080 at 966.313 kb on - strand, within MMP_RS05080 at 966.505 kb on - strand, within MMP_RS05080 at 966.559 kb on - strand, within MMP_RS05080 at 966.559 kb on - strand, within MMP_RS05080 at 966.560 kb on + strand, within MMP_RS05080 at 966.578 kb on + strand, within MMP_RS05080 at 966.591 kb on - strand, within MMP_RS05080 at 966.622 kb on - strand, within MMP_RS05080 at 966.623 kb on + strand, within MMP_RS05080 at 966.623 kb on + strand, within MMP_RS05080 at 966.864 kb on - strand, within MMP_RS05080 at 966.910 kb on + strand, within MMP_RS05080 at 966.964 kb on - strand, within MMP_RS05080 at 966.964 kb on - strand, within MMP_RS05080 at 966.965 kb on + strand, within MMP_RS05080 at 966.965 kb on + strand, within MMP_RS05080 at 967.021 kb on - strand, within MMP_RS05080 at 967.022 kb on + strand, within MMP_RS05080 at 967.467 kb on + strand, within MMP_RS05085 at 967.483 kb on + strand, within MMP_RS05085 at 967.570 kb on - strand, within MMP_RS05085 at 967.732 kb on + strand, within MMP_RS05085 at 967.741 kb on - strand, within MMP_RS05085 at 967.742 kb on + strand, within MMP_RS05085 at 967.781 kb on - strand, within MMP_RS05085 at 967.795 kb on - strand, within MMP_RS05085 at 967.853 kb on - strand, within MMP_RS05085 at 967.871 kb on - strand, within MMP_RS05085 at 967.892 kb on - strand, within MMP_RS05085 at 967.910 kb on - strand, within MMP_RS05085 at 967.911 kb on + strand, within MMP_RS05085 at 968.129 kb on - strand at 968.130 kb on + strand at 968.297 kb on + strand, within MMP_RS05090
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE remove 965,209 - MMP_RS05075 0.29 -5.6 965,252 - MMP_RS05075 0.32 -5.2 965,256 - MMP_RS05075 0.33 -5.3 965,265 - MMP_RS05075 0.33 -4.6 965,439 + MMP_RS05075 0.46 -4.4 965,477 + MMP_RS05075 0.49 -4.3 965,496 - MMP_RS05075 0.50 -5.8 965,496 - MMP_RS05075 0.50 -4.9 965,497 + MMP_RS05075 0.50 -5.3 965,497 + MMP_RS05075 0.50 -4.7 965,598 - MMP_RS05075 0.57 -4.1 965,621 - MMP_RS05075 0.59 -4.6 965,639 + MMP_RS05075 0.60 -4.3 965,790 - MMP_RS05075 0.71 -5.4 965,791 + MMP_RS05075 0.71 -3.7 965,890 + MMP_RS05075 0.79 -3.8 965,890 + MMP_RS05075 0.79 -5.2 965,890 + MMP_RS05075 0.79 -5.2 965,917 - MMP_RS05075 0.81 -3.3 965,918 + MMP_RS05075 0.81 -3.1 965,918 + MMP_RS05075 0.81 -4.5 965,921 + MMP_RS05075 0.81 -5.3 965,936 - MMP_RS05075 0.82 -3.7 965,936 - MMP_RS05075 0.82 -4.5 965,937 + MMP_RS05075 0.82 -4.9 965,938 - MMP_RS05075 0.82 -3.5 965,939 + MMP_RS05075 0.82 -4.7 965,939 + MMP_RS05075 0.82 -5.0 965,940 - MMP_RS05075 0.82 -5.4 965,941 + MMP_RS05075 0.82 -5.5 965,941 + MMP_RS05075 0.82 -3.4 965,941 + MMP_RS05075 0.82 -4.2 966,017 - MMP_RS05075 0.88 -5.9 966,047 - -4.0 966,108 + -5.9 966,161 - -5.2 966,161 - -5.0 966,209 + -5.1 966,222 - -6.9 966,223 + -5.4 966,252 + -3.6 966,313 - MMP_RS05080 0.10 -5.0 966,313 - MMP_RS05080 0.10 -4.4 966,505 - MMP_RS05080 0.27 -4.5 966,559 - MMP_RS05080 0.31 -4.9 966,559 - MMP_RS05080 0.31 -4.7 966,560 + MMP_RS05080 0.32 -5.9 966,578 + MMP_RS05080 0.33 -4.4 966,591 - MMP_RS05080 0.34 -4.7 966,622 - MMP_RS05080 0.37 -6.0 966,623 + MMP_RS05080 0.37 -6.4 966,623 + MMP_RS05080 0.37 -4.4 966,864 - MMP_RS05080 0.58 -5.3 966,910 + MMP_RS05080 0.62 -4.1 966,964 - MMP_RS05080 0.66 -5.2 966,964 - MMP_RS05080 0.66 -5.2 966,965 + MMP_RS05080 0.67 -5.5 966,965 + MMP_RS05080 0.67 -5.4 967,021 - MMP_RS05080 0.71 -5.4 967,022 + MMP_RS05080 0.72 -4.8 967,467 + MMP_RS05085 0.14 -3.8 967,483 + MMP_RS05085 0.16 -5.1 967,570 - MMP_RS05085 0.27 -4.8 967,732 + MMP_RS05085 0.49 -4.6 967,741 - MMP_RS05085 0.50 -3.5 967,742 + MMP_RS05085 0.50 -6.1 967,781 - MMP_RS05085 0.55 -5.3 967,795 - MMP_RS05085 0.57 -4.9 967,853 - MMP_RS05085 0.65 -4.4 967,871 - MMP_RS05085 0.67 -5.2 967,892 - MMP_RS05085 0.70 -5.6 967,910 - MMP_RS05085 0.72 -3.9 967,911 + MMP_RS05085 0.73 -4.0 968,129 - -6.5 968,130 + -5.4 968,297 + MMP_RS05090 0.12 -6.1
Or see this region's nucleotide sequence