Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12390

Experiment: R2A control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A control
2,761,841	+				+0.4
2,761,842	-				+0.2
2,761,843	-				+0.3
2,761,908	+				+2.2
2,761,908	+				+0.5
2,761,909	-				+1.2
2,762,046	+		LRK54_RS12390	0.23	-0.0
2,762,046	+		LRK54_RS12390	0.23	+0.2
2,762,046	+		LRK54_RS12390	0.23	-0.1
2,762,046	+		LRK54_RS12390	0.23	-0.2
2,762,046	+		LRK54_RS12390	0.23	-0.5
2,762,047	-		LRK54_RS12390	0.23	+0.2
2,762,047	-		LRK54_RS12390	0.23	-0.1
2,762,047	-		LRK54_RS12390	0.23	-1.7
2,762,073	+		LRK54_RS12390	0.25	-1.0
2,762,073	+		LRK54_RS12390	0.25	-0.5
2,762,073	+		LRK54_RS12390	0.25	+0.2
2,762,073	+		LRK54_RS12390	0.25	-1.3
2,762,073	+		LRK54_RS12390	0.25	-0.5
2,762,073	+		LRK54_RS12390	0.25	-1.0
2,762,073	+		LRK54_RS12390	0.25	+0.0
2,762,073	+		LRK54_RS12390	0.25	-0.6
2,762,073	+		LRK54_RS12390	0.25	-0.1
2,762,073	+		LRK54_RS12390	0.25	-0.3
2,762,073	+		LRK54_RS12390	0.25	-0.1
2,762,074	-		LRK54_RS12390	0.25	-0.4
2,762,074	-		LRK54_RS12390	0.25	-0.9
2,762,074	-		LRK54_RS12390	0.25	-0.3
2,762,074	-		LRK54_RS12390	0.25	-0.9
2,762,074	-		LRK54_RS12390	0.25	-0.8
2,762,074	-		LRK54_RS12390	0.25	+0.6
2,762,074	-		LRK54_RS12390	0.25	+1.5
2,762,074	-		LRK54_RS12390	0.25	-0.9
2,762,074	-		LRK54_RS12390	0.25	-0.2
2,762,074	-		LRK54_RS12390	0.25	-0.1
2,762,074	-		LRK54_RS12390	0.25	-1.3
2,762,074	-		LRK54_RS12390	0.25	+1.2
2,762,074	-		LRK54_RS12390	0.25	+1.0
2,762,074	-		LRK54_RS12390	0.25	-0.0
2,762,074	-		LRK54_RS12390	0.25	-1.0
2,762,074	-		LRK54_RS12390	0.25	+1.0
2,762,262	+		LRK54_RS12390	0.44	-0.2
2,762,262	+		LRK54_RS12390	0.44	-0.3
2,762,262	+		LRK54_RS12390	0.44	-1.0
2,762,262	+		LRK54_RS12390	0.44	+0.7
2,762,263	-		LRK54_RS12390	0.44	-0.6
2,762,263	-		LRK54_RS12390	0.44	-0.2
2,762,263	-		LRK54_RS12390	0.44	+1.6
2,762,538	+		LRK54_RS12390	0.71	+0.1
2,762,538	+		LRK54_RS12390	0.71	-1.8
2,762,539	-		LRK54_RS12390	0.71	+0.5
2,762,539	-		LRK54_RS12390	0.71	-0.5
2,762,592	+		LRK54_RS12390	0.76	+1.5
2,762,592	+		LRK54_RS12390	0.76	+1.8
2,762,592	+		LRK54_RS12390	0.76	+0.4
2,762,592	+		LRK54_RS12390	0.76	+1.8
2,762,592	+		LRK54_RS12390	0.76	-0.6
2,762,592	+		LRK54_RS12390	0.76	+0.1
2,762,593	-		LRK54_RS12390	0.76	+0.8
2,762,593	-		LRK54_RS12390	0.76	+2.2
2,762,593	-		LRK54_RS12390	0.76	+0.1
2,762,643	+		LRK54_RS12390	0.81	-0.9
2,762,643	+		LRK54_RS12390	0.81	-1.4
2,762,643	+		LRK54_RS12390	0.81	-0.1
2,762,643	+		LRK54_RS12390	0.81	+1.4
2,762,643	+		LRK54_RS12390	0.81	-0.1
2,762,643	+		LRK54_RS12390	0.81	+0.0
2,762,643	+		LRK54_RS12390	0.81	-0.3
2,762,643	+		LRK54_RS12390	0.81	+0.5
2,762,643	+		LRK54_RS12390	0.81	-0.5
2,762,644	-		LRK54_RS12390	0.81	-0.2
2,762,644	-		LRK54_RS12390	0.81	+0.2
2,762,644	-		LRK54_RS12390	0.81	+1.1
2,762,644	-		LRK54_RS12390	0.81	-0.5
2,763,141	+		LRK54_RS12395	0.15	+0.1
2,763,141	+		LRK54_RS12395	0.15	+0.1
2,763,141	+		LRK54_RS12395	0.15	+1.1
2,763,141	+		LRK54_RS12395	0.15	+0.8
2,763,142	-		LRK54_RS12395	0.15	+0.4
2,763,142	-		LRK54_RS12395	0.15	+1.4
2,763,142	-		LRK54_RS12395	0.15	-1.5
2,763,142	-		LRK54_RS12395	0.15	-2.4
2,763,142	-		LRK54_RS12395	0.15	+0.2
2,763,142	-		LRK54_RS12395	0.15	-0.4
2,763,142	-		LRK54_RS12395	0.15	-0.2
2,763,213	+		LRK54_RS12395	0.28	-1.4
2,763,213	+		LRK54_RS12395	0.28	-0.5
2,763,213	+		LRK54_RS12395	0.28	+0.2
2,763,213	+		LRK54_RS12395	0.28	+0.8
2,763,213	+		LRK54_RS12395	0.28	-0.3
2,763,213	+		LRK54_RS12395	0.28	-0.8
2,763,213	+		LRK54_RS12395	0.28	+1.5
2,763,213	+		LRK54_RS12395	0.28	+0.2
2,763,213	+		LRK54_RS12395	0.28	-0.5
2,763,214	-		LRK54_RS12395	0.28	-1.9
2,763,214	-		LRK54_RS12395	0.28	-0.2
2,763,214	-		LRK54_RS12395	0.28	+1.2
2,763,214	-		LRK54_RS12395	0.28	+1.4
2,763,288	+		LRK54_RS12395	0.42	-0.5
2,763,288	+		LRK54_RS12395	0.42	-1.1
2,763,288	+		LRK54_RS12395	0.42	+0.3
2,763,288	+		LRK54_RS12395	0.42	-0.1
2,763,288	+		LRK54_RS12395	0.42	-0.1
2,763,288	+		LRK54_RS12395	0.42	-0.5
2,763,288	+		LRK54_RS12395	0.42	-1.6
2,763,288	+		LRK54_RS12395	0.42	-0.2
2,763,288	+		LRK54_RS12395	0.42	-0.2
2,763,288	+		LRK54_RS12395	0.42	+0.4
2,763,288	+		LRK54_RS12395	0.42	+0.5
2,763,289	-		LRK54_RS12395	0.42	-0.1
2,763,289	-		LRK54_RS12395	0.42	+0.8
2,763,289	-		LRK54_RS12395	0.42	+0.6
2,763,289	-		LRK54_RS12395	0.42	+1.5
2,763,289	-		LRK54_RS12395	0.42	-0.4
2,763,289	-		LRK54_RS12395	0.42	+0.2
2,763,289	-		LRK54_RS12395	0.42	-0.6
2,763,289	-		LRK54_RS12395	0.42	+0.7
2,763,289	-		LRK54_RS12395	0.42	+0.3
2,763,289	-		LRK54_RS12395	0.42	-0.7
2,763,289	-		LRK54_RS12395	0.42	+1.0
2,763,289	-		LRK54_RS12395	0.42	-0.3
2,763,289	-		LRK54_RS12395	0.42	+0.1
2,763,289	-		LRK54_RS12395	0.42	-0.1
2,763,289	-		LRK54_RS12395	0.42	+0.3
2,763,289	-		LRK54_RS12395	0.42	-1.1
2,763,289	-		LRK54_RS12395	0.42	+0.4
2,763,289	-		LRK54_RS12395	0.42	+0.1
2,763,289	-		LRK54_RS12395	0.42	-0.4
2,763,424	+		LRK54_RS12395	0.67	+0.4
2,763,424	+		LRK54_RS12395	0.67	+0.8
2,763,424	+		LRK54_RS12395	0.67	+0.3
2,763,424	+		LRK54_RS12395	0.67	+0.4
2,763,424	+		LRK54_RS12395	0.67	-0.1
2,763,425	-		LRK54_RS12395	0.67	+0.1
2,763,425	-		LRK54_RS12395	0.67	+0.5
2,763,425	-		LRK54_RS12395	0.67	-1.0
2,763,425	-		LRK54_RS12395	0.67	-0.1
2,763,576	+				-2.2
2,763,576	+				-1.0
2,763,576	+				-0.6
2,763,576	+				+1.2
2,763,576	+				-0.9
2,763,576	+				-0.0
2,763,576	+				-1.3
2,763,576	+				+0.1
2,763,576	+				+1.7
2,763,576	+				-1.1
2,763,576	+				-0.5
2,763,577	-				+0.5
2,763,577	-				+2.2
2,763,577	-				-0.2
2,763,577	-				+0.7
2,763,577	-				-0.1
2,763,577	-				-1.3
2,763,577	-				-1.3
2,763,577	-				+0.8
2,763,577	-				-0.4
2,763,577	-				-0.1
2,763,577	-				+0.6
2,763,577	-				+1.4
2,763,577	-				-2.3
2,763,577	-				+0.0
2,763,577	-				+0.5
2,763,584	-				+0.4
2,763,813	+		LRK54_RS12400	0.20	+0.2
2,763,813	+		LRK54_RS12400	0.20	+0.1
2,763,813	+		LRK54_RS12400	0.20	-0.8
2,763,813	+		LRK54_RS12400	0.20	-0.1
2,763,813	+		LRK54_RS12400	0.20	-0.6
2,763,813	+		LRK54_RS12400	0.20	-0.1
2,763,813	+		LRK54_RS12400	0.20	+0.1
2,763,814	-		LRK54_RS12400	0.20	+0.5
2,763,814	-		LRK54_RS12400	0.20	-0.1
2,763,814	-		LRK54_RS12400	0.20	-0.0