Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27385

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27375 and AO353_27380 are separated by 131 nucleotidesAO353_27380 and AO353_27385 are separated by 525 nucleotidesAO353_27385 and AO353_27390 overlap by 8 nucleotides AO353_27375: AO353_27375 - DNA packaging protein, at 5,981,282 to 5,981,806 _27375 AO353_27380: AO353_27380 - pyocin R2, holin, at 5,981,938 to 5,982,276 _27380 AO353_27385: AO353_27385 - hypothetical protein, at 5,982,802 to 5,983,164 _27385 AO353_27390: AO353_27390 - conjugal transfer protein TraC, at 5,983,157 to 5,985,373 _27390 Position (kb) 5982 5983 5984Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5981.810 kb on + strandat 5981.810 kb on + strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.811 kb on - strandat 5981.939 kb on + strandat 5982.229 kb on + strand, within AO353_27380at 5982.229 kb on + strand, within AO353_27380at 5982.230 kb on - strand, within AO353_27380at 5982.289 kb on - strandat 5982.357 kb on + strandat 5982.370 kb on + strandat 5982.371 kb on - strandat 5982.378 kb on - strandat 5982.410 kb on + strandat 5982.411 kb on - strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.427 kb on + strandat 5982.428 kb on - strandat 5982.509 kb on + strandat 5982.509 kb on + strandat 5982.509 kb on + strandat 5982.510 kb on - strandat 5982.646 kb on - strandat 5982.797 kb on + strandat 5982.797 kb on + strandat 5982.837 kb on - strandat 5982.837 kb on - strandat 5982.837 kb on - strandat 5982.863 kb on + strand, within AO353_27385at 5982.863 kb on + strand, within AO353_27385at 5982.863 kb on + strand, within AO353_27385at 5982.863 kb on + strand, within AO353_27385at 5982.863 kb on + strand, within AO353_27385at 5982.863 kb on + strand, within AO353_27385at 5982.864 kb on - strand, within AO353_27385at 5982.864 kb on - strand, within AO353_27385at 5982.867 kb on - strand, within AO353_27385at 5982.867 kb on - strand, within AO353_27385at 5982.890 kb on + strand, within AO353_27385at 5982.890 kb on + strand, within AO353_27385at 5982.890 kb on + strand, within AO353_27385at 5982.890 kb on + strand, within AO353_27385at 5982.890 kb on + strand, within AO353_27385at 5982.890 kb on + strand, within AO353_27385at 5982.929 kb on + strand, within AO353_27385at 5982.930 kb on - strand, within AO353_27385at 5982.930 kb on - strand, within AO353_27385at 5983.230 kb on + strandat 5983.231 kb on - strandat 5983.231 kb on - strandat 5983.231 kb on - strandat 5983.231 kb on - strandat 5983.524 kb on + strand, within AO353_27390at 5983.525 kb on - strand, within AO353_27390at 5983.591 kb on + strand, within AO353_27390at 5983.592 kb on - strand, within AO353_27390at 5983.638 kb on + strand, within AO353_27390at 5983.638 kb on + strand, within AO353_27390at 5983.638 kb on + strand, within AO353_27390at 5983.638 kb on + strand, within AO353_27390at 5983.639 kb on - strand, within AO353_27390at 5983.639 kb on - strand, within AO353_27390at 5983.639 kb on - strand, within AO353_27390at 5983.639 kb on - strand, within AO353_27390at 5983.639 kb on - strand, within AO353_27390at 5983.704 kb on + strand, within AO353_27390at 5983.704 kb on + strand, within AO353_27390at 5983.717 kb on - strand, within AO353_27390at 5983.717 kb on - strand, within AO353_27390at 5983.757 kb on - strand, within AO353_27390at 5983.757 kb on - strand, within AO353_27390at 5983.757 kb on - strand, within AO353_27390at 5983.861 kb on + strand, within AO353_27390at 5984.011 kb on - strand, within AO353_27390at 5984.091 kb on + strand, within AO353_27390at 5984.092 kb on - strand, within AO353_27390at 5984.092 kb on - strand, within AO353_27390at 5984.092 kb on - strand, within AO353_27390at 5984.092 kb on - strand, within AO353_27390at 5984.147 kb on + strand, within AO353_27390at 5984.147 kb on + strand, within AO353_27390at 5984.147 kb on + strand, within AO353_27390at 5984.148 kb on - strand, within AO353_27390at 5984.148 kb on - strand, within AO353_27390at 5984.148 kb on - strand, within AO353_27390at 5984.148 kb on - strand, within AO353_27390at 5984.148 kb on - strand, within AO353_27390at 5984.148 kb on - strand, within AO353_27390

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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5,981,810 + -0.5
5,981,810 + +0.9
5,981,811 - +0.0
5,981,811 - +0.5
5,981,811 - -0.1
5,981,811 - +0.2
5,981,811 - -0.3
5,981,939 + -0.4
5,982,229 + AO353_27380 0.86 +0.1
5,982,229 + AO353_27380 0.86 +0.9
5,982,230 - AO353_27380 0.86 -0.1
5,982,289 - +0.6
5,982,357 + -1.3
5,982,370 + +0.4
5,982,371 - -0.5
5,982,378 - -1.7
5,982,410 + -0.5
5,982,411 - -0.3
5,982,427 + +0.2
5,982,427 + +0.5
5,982,427 + -0.1
5,982,427 + -1.1
5,982,427 + +0.4
5,982,428 - +0.5
5,982,509 + -0.2
5,982,509 + +0.2
5,982,509 + +0.9
5,982,510 - -0.9
5,982,646 - -0.7
5,982,797 + -0.3
5,982,797 + +0.7
5,982,837 - -1.0
5,982,837 - +0.4
5,982,837 - -0.4
5,982,863 + AO353_27385 0.17 +0.9
5,982,863 + AO353_27385 0.17 -1.8
5,982,863 + AO353_27385 0.17 -0.7
5,982,863 + AO353_27385 0.17 +0.9
5,982,863 + AO353_27385 0.17 +0.1
5,982,863 + AO353_27385 0.17 -0.1
5,982,864 - AO353_27385 0.17 -0.0
5,982,864 - AO353_27385 0.17 +1.3
5,982,867 - AO353_27385 0.18 -1.1
5,982,867 - AO353_27385 0.18 -0.1
5,982,890 + AO353_27385 0.24 +1.4
5,982,890 + AO353_27385 0.24 +0.1
5,982,890 + AO353_27385 0.24 +0.2
5,982,890 + AO353_27385 0.24 +0.6
5,982,890 + AO353_27385 0.24 -0.0
5,982,890 + AO353_27385 0.24 +0.4
5,982,929 + AO353_27385 0.35 +0.6
5,982,930 - AO353_27385 0.35 +0.7
5,982,930 - AO353_27385 0.35 +0.6
5,983,230 + +0.4
5,983,231 - -0.3
5,983,231 - -0.6
5,983,231 - -3.2
5,983,231 - +0.6
5,983,524 + AO353_27390 0.17 -0.7
5,983,525 - AO353_27390 0.17 -0.1
5,983,591 + AO353_27390 0.20 -1.8
5,983,592 - AO353_27390 0.20 +0.7
5,983,638 + AO353_27390 0.22 -0.4
5,983,638 + AO353_27390 0.22 +1.5
5,983,638 + AO353_27390 0.22 +1.1
5,983,638 + AO353_27390 0.22 -0.1
5,983,639 - AO353_27390 0.22 +1.0
5,983,639 - AO353_27390 0.22 +0.8
5,983,639 - AO353_27390 0.22 -0.1
5,983,639 - AO353_27390 0.22 +0.1
5,983,639 - AO353_27390 0.22 -0.9
5,983,704 + AO353_27390 0.25 +0.2
5,983,704 + AO353_27390 0.25 +1.4
5,983,717 - AO353_27390 0.25 -2.7
5,983,717 - AO353_27390 0.25 +1.9
5,983,757 - AO353_27390 0.27 -1.9
5,983,757 - AO353_27390 0.27 +0.3
5,983,757 - AO353_27390 0.27 +0.2
5,983,861 + AO353_27390 0.32 -1.8
5,984,011 - AO353_27390 0.39 +0.4
5,984,091 + AO353_27390 0.42 -0.2
5,984,092 - AO353_27390 0.42 -0.2
5,984,092 - AO353_27390 0.42 +1.5
5,984,092 - AO353_27390 0.42 +0.3
5,984,092 - AO353_27390 0.42 +0.5
5,984,147 + AO353_27390 0.45 +0.4
5,984,147 + AO353_27390 0.45 +0.2
5,984,147 + AO353_27390 0.45 +0.2
5,984,148 - AO353_27390 0.45 -0.2
5,984,148 - AO353_27390 0.45 -0.7
5,984,148 - AO353_27390 0.45 +0.7
5,984,148 - AO353_27390 0.45 -1.9
5,984,148 - AO353_27390 0.45 -1.4
5,984,148 - AO353_27390 0.45 +0.1

Or see this region's nucleotide sequence