Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25790

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25780 and AO353_25785 are separated by 1 nucleotidesAO353_25785 and AO353_25790 are separated by 54 nucleotidesAO353_25790 and AO353_25795 are separated by 70 nucleotidesAO353_25795 and AO353_25800 are separated by 33 nucleotides AO353_25780: AO353_25780 - hypothetical protein, at 5,683,037 to 5,683,474 _25780 AO353_25785: AO353_25785 - adhesin, at 5,683,476 to 5,684,048 _25785 AO353_25790: AO353_25790 - heme utilization protein, at 5,684,103 to 5,685,401 _25790 AO353_25795: AO353_25795 - peptidase C39, at 5,685,472 to 5,686,152 _25795 AO353_25800: AO353_25800 - hypothetical protein, at 5,686,186 to 5,686,926 _25800 Position (kb) 5684 5685 5686Strain fitness (log2 ratio) -2 -1 0 1 2at 5683.579 kb on - strand, within AO353_25785at 5683.697 kb on + strand, within AO353_25785at 5683.698 kb on - strand, within AO353_25785at 5683.769 kb on - strand, within AO353_25785at 5683.819 kb on + strand, within AO353_25785at 5683.838 kb on + strand, within AO353_25785at 5683.839 kb on - strand, within AO353_25785at 5683.850 kb on + strand, within AO353_25785at 5683.850 kb on + strand, within AO353_25785at 5683.916 kb on + strand, within AO353_25785at 5683.916 kb on + strand, within AO353_25785at 5684.073 kb on + strandat 5684.073 kb on + strandat 5684.073 kb on + strandat 5684.073 kb on + strandat 5684.074 kb on - strandat 5684.074 kb on - strandat 5684.074 kb on - strandat 5684.078 kb on + strandat 5684.084 kb on + strandat 5684.085 kb on - strandat 5684.085 kb on - strandat 5684.085 kb on - strandat 5684.160 kb on - strandat 5684.167 kb on + strandat 5684.167 kb on + strandat 5684.168 kb on - strandat 5684.168 kb on - strandat 5684.168 kb on - strandat 5684.168 kb on - strandat 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strand, within AO353_25790at 5684.286 kb on + strandat 5684.286 kb on + strand, within AO353_25790at 5684.287 kb on - strand, within AO353_25790at 5684.287 kb on - strand, within AO353_25790at 5684.287 kb on - strand, within AO353_25790at 5684.287 kb on - strandat 5684.287 kb on - strand, within AO353_25790at 5684.287 kb on - strandat 5684.287 kb on - strand, within AO353_25790at 5684.307 kb on - strand, within AO353_25790at 5684.493 kb on + strand, within AO353_25790at 5684.493 kb on + strand, within AO353_25790at 5684.493 kb on + strand, within AO353_25790at 5684.494 kb on - strand, within AO353_25790at 5684.522 kb on + strand, within AO353_25790at 5684.522 kb on + strand, within AO353_25790at 5684.522 kb on + strand, within AO353_25790at 5684.522 kb on + strand, within AO353_25790at 5684.523 kb on - strand, within AO353_25790at 5684.636 kb on + strand, within AO353_25790at 5684.637 kb on - strand, within AO353_25790at 5684.714 kb on + strand, within AO353_25790at 5684.831 kb on + strand, within AO353_25790at 5684.832 kb on - strand, within AO353_25790at 5684.832 kb on - strand, within AO353_25790at 5684.924 kb on + strand, within AO353_25790at 5684.925 kb on - strand, within AO353_25790at 5684.955 kb on - strand, within AO353_25790at 5684.960 kb on + strand, within AO353_25790at 5684.960 kb on + strand, within AO353_25790at 5684.960 kb on + strand, within AO353_25790at 5684.960 kb on + strand, within AO353_25790at 5684.961 kb on - strand, within AO353_25790at 5684.961 kb on - strand, within AO353_25790at 5684.961 kb on - strand, within AO353_25790at 5685.177 kb on - strand, within AO353_25790at 5685.399 kb on + strandat 5685.399 kb on + strandat 5685.399 kb on + strandat 5685.400 kb on - strandat 5685.662 kb on + strand, within AO353_25795at 5685.663 kb on - strand, within AO353_25795at 5685.689 kb on + strand, within AO353_25795at 5685.689 kb on + strand, within AO353_25795at 5685.781 kb on + strand, within AO353_25795at 5685.782 kb on - strand, within AO353_25795at 5685.782 kb on - strand, within AO353_25795at 5685.792 kb on + strand, within AO353_25795at 5685.793 kb on - strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.928 kb on + strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5685.929 kb on - strand, within AO353_25795at 5686.013 kb on + strand, within AO353_25795at 5686.013 kb on + strand, within AO353_25795at 5686.151 kb on - strandat 5686.181 kb on - strandat 5686.303 kb on + strand, within AO353_25800at 5686.303 kb on + strand, within AO353_25800at 5686.303 kb on + strand, within AO353_25800

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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5,683,579 - AO353_25785 0.18 -1.8
5,683,697 + AO353_25785 0.39 -0.0
5,683,698 - AO353_25785 0.39 -0.2
5,683,769 - AO353_25785 0.51 -0.8
5,683,819 + AO353_25785 0.60 +1.2
5,683,838 + AO353_25785 0.63 +0.2
5,683,839 - AO353_25785 0.63 -0.1
5,683,850 + AO353_25785 0.65 -0.2
5,683,850 + AO353_25785 0.65 +0.8
5,683,916 + AO353_25785 0.77 +0.1
5,683,916 + AO353_25785 0.77 -0.2
5,684,073 + +0.6
5,684,073 + -0.3
5,684,073 + -1.4
5,684,073 + -0.2
5,684,074 - -0.3
5,684,074 - -1.8
5,684,074 - -0.6
5,684,078 + +0.1
5,684,084 + +0.2
5,684,085 - +1.1
5,684,085 - -1.3
5,684,085 - +0.6
5,684,160 - +0.5
5,684,167 + -0.1
5,684,167 + +1.3
5,684,168 - -0.5
5,684,168 - +0.8
5,684,168 - -0.7
5,684,168 - -0.7
5,684,286 + AO353_25790 0.14 -1.5
5,684,286 + AO353_25790 0.14 +0.4
5,684,286 + AO353_25790 0.14 +1.3
5,684,286 + AO353_25790 0.14 +0.7
5,684,286 + AO353_25790 0.14 +1.3
5,684,286 + AO353_25790 0.14 +0.4
5,684,286 + AO353_25790 0.14 +1.6
5,684,286 + AO353_25790 0.14 +0.7
5,684,286 + -0.2
5,684,286 + AO353_25790 0.14 -0.3
5,684,287 - AO353_25790 0.14 +0.6
5,684,287 - AO353_25790 0.14 -0.7
5,684,287 - AO353_25790 0.14 +0.5
5,684,287 - -0.8
5,684,287 - AO353_25790 0.14 +0.2
5,684,287 - -2.0
5,684,287 - AO353_25790 0.14 +1.4
5,684,307 - AO353_25790 0.16 +0.8
5,684,493 + AO353_25790 0.30 +0.4
5,684,493 + AO353_25790 0.30 -0.4
5,684,493 + AO353_25790 0.30 +0.6
5,684,494 - AO353_25790 0.30 +0.1
5,684,522 + AO353_25790 0.32 -1.4
5,684,522 + AO353_25790 0.32 -1.1
5,684,522 + AO353_25790 0.32 -0.2
5,684,522 + AO353_25790 0.32 +2.4
5,684,523 - AO353_25790 0.32 +1.1
5,684,636 + AO353_25790 0.41 +1.8
5,684,637 - AO353_25790 0.41 -0.6
5,684,714 + AO353_25790 0.47 +0.8
5,684,831 + AO353_25790 0.56 +0.4
5,684,832 - AO353_25790 0.56 +0.8
5,684,832 - AO353_25790 0.56 -0.2
5,684,924 + AO353_25790 0.63 +0.3
5,684,925 - AO353_25790 0.63 -0.7
5,684,955 - AO353_25790 0.66 +0.1
5,684,960 + AO353_25790 0.66 +0.5
5,684,960 + AO353_25790 0.66 -0.2
5,684,960 + AO353_25790 0.66 +0.4
5,684,960 + AO353_25790 0.66 +0.1
5,684,961 - AO353_25790 0.66 +0.8
5,684,961 - AO353_25790 0.66 +0.4
5,684,961 - AO353_25790 0.66 +0.8
5,685,177 - AO353_25790 0.83 -1.2
5,685,399 + -0.4
5,685,399 + -0.8
5,685,399 + -0.3
5,685,400 - +0.8
5,685,662 + AO353_25795 0.28 -1.8
5,685,663 - AO353_25795 0.28 -0.7
5,685,689 + AO353_25795 0.32 -0.2
5,685,689 + AO353_25795 0.32 -0.0
5,685,781 + AO353_25795 0.45 +0.8
5,685,782 - AO353_25795 0.46 +0.4
5,685,782 - AO353_25795 0.46 +1.5
5,685,792 + AO353_25795 0.47 -0.5
5,685,793 - AO353_25795 0.47 +1.3
5,685,928 + AO353_25795 0.67 -0.2
5,685,928 + AO353_25795 0.67 +0.0
5,685,928 + AO353_25795 0.67 -1.8
5,685,928 + AO353_25795 0.67 -1.1
5,685,928 + AO353_25795 0.67 +0.8
5,685,928 + AO353_25795 0.67 -1.8
5,685,928 + AO353_25795 0.67 +1.1
5,685,929 - AO353_25795 0.67 +0.2
5,685,929 - AO353_25795 0.67 -0.5
5,685,929 - AO353_25795 0.67 +0.5
5,685,929 - AO353_25795 0.67 -0.0
5,685,929 - AO353_25795 0.67 -0.2
5,685,929 - AO353_25795 0.67 -0.5
5,685,929 - AO353_25795 0.67 -0.9
5,685,929 - AO353_25795 0.67 +0.4
5,685,929 - AO353_25795 0.67 +0.5
5,685,929 - AO353_25795 0.67 -2.0
5,685,929 - AO353_25795 0.67 +0.2
5,685,929 - AO353_25795 0.67 +0.5
5,685,929 - AO353_25795 0.67 +0.7
5,685,929 - AO353_25795 0.67 -1.2
5,685,929 - AO353_25795 0.67 -0.4
5,685,929 - AO353_25795 0.67 -2.2
5,685,929 - AO353_25795 0.67 +0.8
5,685,929 - AO353_25795 0.67 -0.3
5,685,929 - AO353_25795 0.67 -0.9
5,686,013 + AO353_25795 0.79 -2.0
5,686,013 + AO353_25795 0.79 +0.7
5,686,151 - +0.3
5,686,181 - -0.8
5,686,303 + AO353_25800 0.16 +0.8
5,686,303 + AO353_25800 0.16 -1.2
5,686,303 + AO353_25800 0.16 -0.2

Or see this region's nucleotide sequence