Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20490

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_20475 and AO353_20480 are separated by 8 nucleotidesAO353_20480 and AO353_20485 are separated by 3 nucleotidesAO353_20485 and AO353_20490 are separated by 223 nucleotidesAO353_20490 and AO353_20495 are separated by 134 nucleotidesAO353_20495 and AO353_20500 are separated by 8 nucleotides AO353_20475: AO353_20475 - N-hydroxyarylamine O-acetyltransferase, at 4,497,282 to 4,498,121 _20475 AO353_20480: AO353_20480 - hypothetical protein, at 4,498,130 to 4,498,510 _20480 AO353_20485: AO353_20485 - hypothetical protein, at 4,498,514 to 4,498,795 _20485 AO353_20490: AO353_20490 - uracil permease, at 4,499,019 to 4,500,539 _20490 AO353_20495: AO353_20495 - NUDIX hydrolase, at 4,500,674 to 4,501,186 _20495 AO353_20500: AO353_20500 - ADP-ribose pyrophosphatase, at 4,501,195 to 4,501,902 _20500 Position (kb) 4499 4500 4501Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4498.351 kb on + strand, within AO353_20480at 4498.351 kb on + strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.352 kb on - strand, within AO353_20480at 4498.412 kb on + strand, within AO353_20480at 4498.413 kb on - strand, within AO353_20480at 4498.413 kb on - strand, within AO353_20480at 4498.456 kb on + strand, within AO353_20480at 4498.456 kb on + strand, within AO353_20480at 4498.497 kb on + strandat 4498.498 kb on - strandat 4498.498 kb on - strandat 4498.593 kb on + strand, within AO353_20485at 4498.594 kb on - strand, within AO353_20485at 4498.594 kb on - strand, within AO353_20485at 4498.599 kb on + strand, within AO353_20485at 4498.599 kb on + strand, within AO353_20485at 4498.599 kb on + strand, within AO353_20485at 4498.599 kb on + strand, within AO353_20485at 4498.599 kb on + strand, within AO353_20485at 4498.599 kb on + strand, within AO353_20485at 4498.600 kb on - strand, within AO353_20485at 4498.600 kb on - strand, within AO353_20485at 4498.600 kb on - strand, within AO353_20485at 4498.600 kb on - strand, within AO353_20485at 4498.600 kb on - strand, within AO353_20485at 4498.634 kb on - strand, within AO353_20485at 4498.698 kb on + strand, within AO353_20485at 4498.698 kb on + strand, within AO353_20485at 4498.698 kb on + strand, within AO353_20485at 4498.699 kb on - strand, within AO353_20485at 4498.763 kb on + strand, within AO353_20485at 4498.764 kb on - strand, within AO353_20485at 4498.773 kb on + strandat 4498.807 kb on + strandat 4498.807 kb on + strandat 4498.807 kb on + strandat 4498.808 kb on - strandat 4498.808 kb on - strandat 4498.810 kb on - strandat 4498.810 kb on - strandat 4498.810 kb on - strandat 4498.813 kb on + strandat 4498.814 kb on - strandat 4498.863 kb on + strandat 4498.863 kb on + strandat 4498.896 kb on + strandat 4498.896 kb on + strandat 4498.896 kb on + strandat 4498.896 kb on + strandat 4498.897 kb on - strandat 4498.897 kb on - strandat 4498.897 kb on - strandat 4498.897 kb on - strandat 4498.897 kb on - strandat 4498.897 kb on - strandat 4498.945 kb on + strandat 4499.081 kb on + strandat 4499.089 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.116 kb on - strandat 4499.134 kb on + strandat 4499.135 kb on - strandat 4499.417 kb on + strand, within AO353_20490at 4499.417 kb on + strand, within AO353_20490at 4499.417 kb on + strand, within AO353_20490at 4499.418 kb on - strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.125 kb on + strand, within AO353_20490at 4500.126 kb on - strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.127 kb on + strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.128 kb on - strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.131 kb on + strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.132 kb on - strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.228 kb on + strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.229 kb on - strand, within AO353_20490at 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.420 kb on + strandat 4500.421 kb on - strandat 4500.421 kb on - strandat 4500.829 kb on + strand, within AO353_20495at 4500.830 kb on - strand, within AO353_20495at 4500.830 kb on - strand, within AO353_20495at 4500.837 kb on + strand, within AO353_20495at 4500.837 kb on + strand, within AO353_20495at 4501.143 kb on + strandat 4501.144 kb on - strandat 4501.144 kb on - strandat 4501.196 kb on + strandat 4501.196 kb on + strandat 4501.197 kb on - strandat 4501.197 kb on - strandat 4501.197 kb on - strandat 4501.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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4,498,351 + AO353_20480 0.58 +0.0
4,498,351 + AO353_20480 0.58 +0.1
4,498,352 - AO353_20480 0.58 +1.0
4,498,352 - AO353_20480 0.58 +1.0
4,498,352 - AO353_20480 0.58 +1.2
4,498,352 - AO353_20480 0.58 -0.5
4,498,352 - AO353_20480 0.58 +1.6
4,498,352 - AO353_20480 0.58 -0.4
4,498,352 - AO353_20480 0.58 -0.8
4,498,352 - AO353_20480 0.58 +1.8
4,498,412 + AO353_20480 0.74 -1.7
4,498,413 - AO353_20480 0.74 -1.1
4,498,413 - AO353_20480 0.74 -0.9
4,498,456 + AO353_20480 0.86 -0.6
4,498,456 + AO353_20480 0.86 +0.2
4,498,497 + +1.0
4,498,498 - -0.5
4,498,498 - +0.2
4,498,593 + AO353_20485 0.28 +0.3
4,498,594 - AO353_20485 0.28 -0.5
4,498,594 - AO353_20485 0.28 +0.8
4,498,599 + AO353_20485 0.30 -0.5
4,498,599 + AO353_20485 0.30 +1.3
4,498,599 + AO353_20485 0.30 -0.2
4,498,599 + AO353_20485 0.30 +1.6
4,498,599 + AO353_20485 0.30 -0.4
4,498,599 + AO353_20485 0.30 -0.2
4,498,600 - AO353_20485 0.30 -0.1
4,498,600 - AO353_20485 0.30 +0.3
4,498,600 - AO353_20485 0.30 -1.2
4,498,600 - AO353_20485 0.30 +0.0
4,498,600 - AO353_20485 0.30 +0.9
4,498,634 - AO353_20485 0.43 +0.6
4,498,698 + AO353_20485 0.65 +0.3
4,498,698 + AO353_20485 0.65 +0.4
4,498,698 + AO353_20485 0.65 +1.0
4,498,699 - AO353_20485 0.66 +1.1
4,498,763 + AO353_20485 0.88 -1.0
4,498,764 - AO353_20485 0.89 +0.3
4,498,773 + -1.3
4,498,807 + +0.0
4,498,807 + -0.1
4,498,807 + -0.4
4,498,808 - -1.0
4,498,808 - -1.5
4,498,810 - +0.6
4,498,810 - +0.8
4,498,810 - -1.0
4,498,813 + +0.2
4,498,814 - +0.5
4,498,863 + +0.1
4,498,863 + -3.0
4,498,896 + +0.4
4,498,896 + +0.6
4,498,896 + -0.3
4,498,896 + -0.0
4,498,897 - -1.3
4,498,897 - +0.2
4,498,897 - +1.5
4,498,897 - +0.2
4,498,897 - -0.4
4,498,897 - +0.7
4,498,945 + -0.6
4,499,081 + -0.1
4,499,089 - +1.5
4,499,116 - -0.4
4,499,116 - -0.4
4,499,116 - -0.2
4,499,116 - +1.2
4,499,116 - +0.0
4,499,116 - -0.4
4,499,116 - -0.2
4,499,116 - +0.3
4,499,116 - -0.5
4,499,116 - +0.8
4,499,116 - +0.6
4,499,116 - +2.4
4,499,134 + +0.3
4,499,135 - +1.0
4,499,417 + AO353_20490 0.26 -0.4
4,499,417 + AO353_20490 0.26 +0.0
4,499,417 + AO353_20490 0.26 +0.6
4,499,418 - AO353_20490 0.26 -0.4
4,500,125 + AO353_20490 0.73 -1.3
4,500,125 + AO353_20490 0.73 +1.4
4,500,125 + AO353_20490 0.73 +0.0
4,500,125 + AO353_20490 0.73 -1.5
4,500,126 - AO353_20490 0.73 +0.0
4,500,127 + AO353_20490 0.73 +1.0
4,500,127 + AO353_20490 0.73 -1.0
4,500,127 + AO353_20490 0.73 -0.3
4,500,127 + AO353_20490 0.73 -1.5
4,500,127 + AO353_20490 0.73 -2.0
4,500,127 + AO353_20490 0.73 +1.5
4,500,127 + AO353_20490 0.73 -0.9
4,500,127 + AO353_20490 0.73 +0.4
4,500,127 + AO353_20490 0.73 -0.0
4,500,127 + AO353_20490 0.73 +0.5
4,500,128 - AO353_20490 0.73 +0.5
4,500,128 - AO353_20490 0.73 -0.5
4,500,128 - AO353_20490 0.73 +1.5
4,500,128 - AO353_20490 0.73 -1.3
4,500,128 - AO353_20490 0.73 -0.5
4,500,128 - AO353_20490 0.73 -1.1
4,500,128 - AO353_20490 0.73 -0.4
4,500,128 - AO353_20490 0.73 -1.3
4,500,128 - AO353_20490 0.73 -0.2
4,500,128 - AO353_20490 0.73 -1.5
4,500,128 - AO353_20490 0.73 +1.0
4,500,128 - AO353_20490 0.73 -0.4
4,500,128 - AO353_20490 0.73 -0.6
4,500,128 - AO353_20490 0.73 +0.6
4,500,128 - AO353_20490 0.73 -1.8
4,500,128 - AO353_20490 0.73 +0.6
4,500,131 + AO353_20490 0.73 +0.0
4,500,131 + AO353_20490 0.73 +0.0
4,500,131 + AO353_20490 0.73 +0.5
4,500,131 + AO353_20490 0.73 -1.4
4,500,131 + AO353_20490 0.73 -1.3
4,500,131 + AO353_20490 0.73 +0.5
4,500,131 + AO353_20490 0.73 +0.0
4,500,132 - AO353_20490 0.73 +0.3
4,500,132 - AO353_20490 0.73 -0.5
4,500,132 - AO353_20490 0.73 +0.0
4,500,132 - AO353_20490 0.73 +0.5
4,500,132 - AO353_20490 0.73 +0.9
4,500,132 - AO353_20490 0.73 +0.3
4,500,228 + AO353_20490 0.79 +0.8
4,500,228 + AO353_20490 0.79 +1.0
4,500,228 + AO353_20490 0.79 -1.0
4,500,228 + AO353_20490 0.79 +0.8
4,500,229 - AO353_20490 0.80 +2.3
4,500,229 - AO353_20490 0.80 +0.7
4,500,229 - AO353_20490 0.80 -0.5
4,500,229 - AO353_20490 0.80 -0.0
4,500,420 + -0.2
4,500,420 + +0.0
4,500,420 + -2.0
4,500,420 + -0.1
4,500,420 + -0.3
4,500,420 + +0.5
4,500,420 + +0.6
4,500,421 - +1.5
4,500,421 - +1.0
4,500,829 + AO353_20495 0.30 +0.0
4,500,830 - AO353_20495 0.30 +0.2
4,500,830 - AO353_20495 0.30 -1.1
4,500,837 + AO353_20495 0.32 +1.6
4,500,837 + AO353_20495 0.32 +0.0
4,501,143 + -0.4
4,501,144 - +2.6
4,501,144 - +0.0
4,501,196 + +0.3
4,501,196 + -2.8
4,501,197 - +0.0
4,501,197 - -0.2
4,501,197 - -0.8
4,501,197 - -0.2

Or see this region's nucleotide sequence