Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13885

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13880 and AO353_13885 overlap by 14 nucleotidesAO353_13885 and AO353_13890 are separated by 83 nucleotides AO353_13880: AO353_13880 - acetyl-CoA acetyltransferase, at 3,083,350 to 3,084,627 _13880 AO353_13885: AO353_13885 - bile acid:sodium symporter, at 3,084,614 to 3,085,642 _13885 AO353_13890: AO353_13890 - AraC family transcriptional regulator, at 3,085,726 to 3,086,517 _13890 Position (kb) 3084 3085 3086Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3084.335 kb on - strand, within AO353_13880at 3084.335 kb on - strand, within AO353_13880at 3084.337 kb on + strand, within AO353_13880at 3084.337 kb on + strand, within AO353_13880at 3084.338 kb on - strand, within AO353_13880at 3084.403 kb on + strand, within AO353_13880at 3084.404 kb on - strand, within AO353_13880at 3084.615 kb on + strandat 3084.616 kb on - strandat 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.720 kb on + strand, within AO353_13885at 3084.721 kb on - strand, within AO353_13885at 3084.721 kb on - strand, within AO353_13885at 3084.721 kb on - strand, within AO353_13885at 3084.721 kb on - strand, within AO353_13885at 3084.721 kb on - strand, within AO353_13885at 3084.941 kb on - strand, within AO353_13885at 3085.184 kb on + strand, within AO353_13885at 3085.185 kb on - strand, within AO353_13885at 3085.209 kb on - strand, within AO353_13885at 3085.209 kb on - strand, within AO353_13885at 3085.311 kb on + strand, within AO353_13885at 3085.311 kb on + strand, within AO353_13885at 3085.312 kb on - strand, within AO353_13885at 3085.312 kb on - strand, within AO353_13885at 3085.312 kb on - strand, within AO353_13885at 3085.312 kb on - strand, within AO353_13885at 3085.368 kb on - strand, within AO353_13885at 3085.376 kb on + strand, within AO353_13885at 3085.376 kb on + strand, within AO353_13885at 3085.377 kb on - strand, within AO353_13885at 3085.377 kb on - strand, within AO353_13885at 3085.678 kb on + strandat 3085.678 kb on + strandat 3085.684 kb on - strandat 3085.684 kb on - strandat 3085.684 kb on - strandat 3085.715 kb on - strandat 3085.715 kb on - strandat 3085.867 kb on + strand, within AO353_13890at 3085.867 kb on + strand, within AO353_13890at 3085.892 kb on + strand, within AO353_13890at 3085.892 kb on + strand, within AO353_13890at 3085.892 kb on + strand, within AO353_13890at 3085.892 kb on + strand, within AO353_13890at 3085.893 kb on - strand, within AO353_13890at 3085.893 kb on - strand, within AO353_13890at 3085.893 kb on - strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.002 kb on + strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.003 kb on - strand, within AO353_13890at 3086.059 kb on - strand, within AO353_13890at 3086.111 kb on - strand, within AO353_13890at 3086.460 kb on + strandat 3086.461 kb on - strandat 3086.461 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.516 kb on - strandat 3086.573 kb on + strandat 3086.592 kb on + strandat 3086.592 kb on + strandat 3086.600 kb on - strandat 3086.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,084,335 - AO353_13880 0.77 +0.4
3,084,335 - AO353_13880 0.77 -0.4
3,084,337 + AO353_13880 0.77 +0.2
3,084,337 + AO353_13880 0.77 -0.6
3,084,338 - AO353_13880 0.77 -1.2
3,084,403 + AO353_13880 0.82 -0.2
3,084,404 - AO353_13880 0.82 -0.0
3,084,615 + -0.4
3,084,616 - -1.1
3,084,720 + AO353_13885 0.10 +0.7
3,084,720 + AO353_13885 0.10 -1.2
3,084,720 + AO353_13885 0.10 -0.0
3,084,720 + AO353_13885 0.10 +0.7
3,084,720 + AO353_13885 0.10 -0.0
3,084,720 + AO353_13885 0.10 -0.0
3,084,720 + AO353_13885 0.10 -0.2
3,084,720 + AO353_13885 0.10 +0.5
3,084,720 + AO353_13885 0.10 +0.2
3,084,720 + AO353_13885 0.10 +0.6
3,084,720 + AO353_13885 0.10 +0.1
3,084,721 - AO353_13885 0.10 -0.8
3,084,721 - AO353_13885 0.10 +1.6
3,084,721 - AO353_13885 0.10 +0.7
3,084,721 - AO353_13885 0.10 +1.3
3,084,721 - AO353_13885 0.10 -1.6
3,084,941 - AO353_13885 0.32 -0.2
3,085,184 + AO353_13885 0.55 +0.3
3,085,185 - AO353_13885 0.55 +0.9
3,085,209 - AO353_13885 0.58 +0.9
3,085,209 - AO353_13885 0.58 +1.6
3,085,311 + AO353_13885 0.68 -1.2
3,085,311 + AO353_13885 0.68 -0.1
3,085,312 - AO353_13885 0.68 +0.1
3,085,312 - AO353_13885 0.68 +1.9
3,085,312 - AO353_13885 0.68 -0.0
3,085,312 - AO353_13885 0.68 -0.3
3,085,368 - AO353_13885 0.73 +2.6
3,085,376 + AO353_13885 0.74 -0.2
3,085,376 + AO353_13885 0.74 -1.0
3,085,377 - AO353_13885 0.74 +0.9
3,085,377 - AO353_13885 0.74 -0.7
3,085,678 + +0.9
3,085,678 + -0.0
3,085,684 - +0.2
3,085,684 - -0.2
3,085,684 - +0.8
3,085,715 - -0.4
3,085,715 - -2.9
3,085,867 + AO353_13890 0.18 +0.1
3,085,867 + AO353_13890 0.18 -0.1
3,085,892 + AO353_13890 0.21 -0.0
3,085,892 + AO353_13890 0.21 +1.1
3,085,892 + AO353_13890 0.21 -0.4
3,085,892 + AO353_13890 0.21 +0.5
3,085,893 - AO353_13890 0.21 +0.6
3,085,893 - AO353_13890 0.21 -0.2
3,085,893 - AO353_13890 0.21 +0.7
3,086,002 + AO353_13890 0.35 -2.5
3,086,002 + AO353_13890 0.35 -0.5
3,086,002 + AO353_13890 0.35 +0.3
3,086,002 + AO353_13890 0.35 -0.2
3,086,002 + AO353_13890 0.35 +0.2
3,086,002 + AO353_13890 0.35 +0.1
3,086,002 + AO353_13890 0.35 +0.2
3,086,003 - AO353_13890 0.35 -0.5
3,086,003 - AO353_13890 0.35 +1.1
3,086,003 - AO353_13890 0.35 +0.4
3,086,003 - AO353_13890 0.35 +0.4
3,086,003 - AO353_13890 0.35 -0.1
3,086,003 - AO353_13890 0.35 +0.5
3,086,003 - AO353_13890 0.35 +1.9
3,086,003 - AO353_13890 0.35 +1.0
3,086,059 - AO353_13890 0.42 -0.5
3,086,111 - AO353_13890 0.49 -0.4
3,086,460 + -1.2
3,086,461 - +0.3
3,086,461 - +0.2
3,086,516 - -0.0
3,086,516 - -0.3
3,086,516 - +0.1
3,086,516 - -0.8
3,086,516 - +0.8
3,086,516 - -1.3
3,086,516 - -0.2
3,086,516 - +0.8
3,086,516 - -0.7
3,086,573 + +0.4
3,086,592 + +0.1
3,086,592 + +0.8
3,086,600 - -0.0
3,086,600 - -0.4

Or see this region's nucleotide sequence