Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_13880 and AO353_13885 overlap by 14 nucleotides AO353_13885 and AO353_13890 are separated by 83 nucleotides
AO353_13880: AO353_13880 - acetyl-CoA acetyltransferase, at 3,083,350 to 3,084,627
_13880
AO353_13885: AO353_13885 - bile acid:sodium symporter, at 3,084,614 to 3,085,642
_13885
AO353_13890: AO353_13890 - AraC family transcriptional regulator, at 3,085,726 to 3,086,517
_13890
Position (kb)
3084
3085
3086 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3084.335 kb on - strand, within AO353_13880 at 3084.335 kb on - strand, within AO353_13880 at 3084.337 kb on + strand, within AO353_13880 at 3084.337 kb on + strand, within AO353_13880 at 3084.338 kb on - strand, within AO353_13880 at 3084.403 kb on + strand, within AO353_13880 at 3084.404 kb on - strand, within AO353_13880 at 3084.615 kb on + strand at 3084.616 kb on - strand at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.720 kb on + strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.721 kb on - strand, within AO353_13885 at 3084.941 kb on - strand, within AO353_13885 at 3085.184 kb on + strand, within AO353_13885 at 3085.185 kb on - strand, within AO353_13885 at 3085.209 kb on - strand, within AO353_13885 at 3085.209 kb on - strand, within AO353_13885 at 3085.311 kb on + strand, within AO353_13885 at 3085.311 kb on + strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.312 kb on - strand, within AO353_13885 at 3085.368 kb on - strand, within AO353_13885 at 3085.376 kb on + strand, within AO353_13885 at 3085.376 kb on + strand, within AO353_13885 at 3085.377 kb on - strand, within AO353_13885 at 3085.377 kb on - strand, within AO353_13885 at 3085.678 kb on + strand at 3085.678 kb on + strand at 3085.684 kb on - strand at 3085.684 kb on - strand at 3085.684 kb on - strand at 3085.715 kb on - strand at 3085.715 kb on - strand at 3085.867 kb on + strand, within AO353_13890 at 3085.867 kb on + strand, within AO353_13890 at 3085.892 kb on + strand, within AO353_13890 at 3085.892 kb on + strand, within AO353_13890 at 3085.892 kb on + strand, within AO353_13890 at 3085.892 kb on + strand, within AO353_13890 at 3085.893 kb on - strand, within AO353_13890 at 3085.893 kb on - strand, within AO353_13890 at 3085.893 kb on - strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.002 kb on + strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.003 kb on - strand, within AO353_13890 at 3086.059 kb on - strand, within AO353_13890 at 3086.111 kb on - strand, within AO353_13890 at 3086.460 kb on + strand at 3086.461 kb on - strand at 3086.461 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.516 kb on - strand at 3086.573 kb on + strand at 3086.592 kb on + strand at 3086.592 kb on + strand at 3086.600 kb on - strand at 3086.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 3,084,335 - AO353_13880 0.77 +0.4 3,084,335 - AO353_13880 0.77 -0.4 3,084,337 + AO353_13880 0.77 +0.2 3,084,337 + AO353_13880 0.77 -0.6 3,084,338 - AO353_13880 0.77 -1.2 3,084,403 + AO353_13880 0.82 -0.2 3,084,404 - AO353_13880 0.82 -0.0 3,084,615 + -0.4 3,084,616 - -1.1 3,084,720 + AO353_13885 0.10 +0.7 3,084,720 + AO353_13885 0.10 -1.2 3,084,720 + AO353_13885 0.10 -0.0 3,084,720 + AO353_13885 0.10 +0.7 3,084,720 + AO353_13885 0.10 -0.0 3,084,720 + AO353_13885 0.10 -0.0 3,084,720 + AO353_13885 0.10 -0.2 3,084,720 + AO353_13885 0.10 +0.5 3,084,720 + AO353_13885 0.10 +0.2 3,084,720 + AO353_13885 0.10 +0.6 3,084,720 + AO353_13885 0.10 +0.1 3,084,721 - AO353_13885 0.10 -0.8 3,084,721 - AO353_13885 0.10 +1.6 3,084,721 - AO353_13885 0.10 +0.7 3,084,721 - AO353_13885 0.10 +1.3 3,084,721 - AO353_13885 0.10 -1.6 3,084,941 - AO353_13885 0.32 -0.2 3,085,184 + AO353_13885 0.55 +0.3 3,085,185 - AO353_13885 0.55 +0.9 3,085,209 - AO353_13885 0.58 +0.9 3,085,209 - AO353_13885 0.58 +1.6 3,085,311 + AO353_13885 0.68 -1.2 3,085,311 + AO353_13885 0.68 -0.1 3,085,312 - AO353_13885 0.68 +0.1 3,085,312 - AO353_13885 0.68 +1.9 3,085,312 - AO353_13885 0.68 -0.0 3,085,312 - AO353_13885 0.68 -0.3 3,085,368 - AO353_13885 0.73 +2.6 3,085,376 + AO353_13885 0.74 -0.2 3,085,376 + AO353_13885 0.74 -1.0 3,085,377 - AO353_13885 0.74 +0.9 3,085,377 - AO353_13885 0.74 -0.7 3,085,678 + +0.9 3,085,678 + -0.0 3,085,684 - +0.2 3,085,684 - -0.2 3,085,684 - +0.8 3,085,715 - -0.4 3,085,715 - -2.9 3,085,867 + AO353_13890 0.18 +0.1 3,085,867 + AO353_13890 0.18 -0.1 3,085,892 + AO353_13890 0.21 -0.0 3,085,892 + AO353_13890 0.21 +1.1 3,085,892 + AO353_13890 0.21 -0.4 3,085,892 + AO353_13890 0.21 +0.5 3,085,893 - AO353_13890 0.21 +0.6 3,085,893 - AO353_13890 0.21 -0.2 3,085,893 - AO353_13890 0.21 +0.7 3,086,002 + AO353_13890 0.35 -2.5 3,086,002 + AO353_13890 0.35 -0.5 3,086,002 + AO353_13890 0.35 +0.3 3,086,002 + AO353_13890 0.35 -0.2 3,086,002 + AO353_13890 0.35 +0.2 3,086,002 + AO353_13890 0.35 +0.1 3,086,002 + AO353_13890 0.35 +0.2 3,086,003 - AO353_13890 0.35 -0.5 3,086,003 - AO353_13890 0.35 +1.1 3,086,003 - AO353_13890 0.35 +0.4 3,086,003 - AO353_13890 0.35 +0.4 3,086,003 - AO353_13890 0.35 -0.1 3,086,003 - AO353_13890 0.35 +0.5 3,086,003 - AO353_13890 0.35 +1.9 3,086,003 - AO353_13890 0.35 +1.0 3,086,059 - AO353_13890 0.42 -0.5 3,086,111 - AO353_13890 0.49 -0.4 3,086,460 + -1.2 3,086,461 - +0.3 3,086,461 - +0.2 3,086,516 - -0.0 3,086,516 - -0.3 3,086,516 - +0.1 3,086,516 - -0.8 3,086,516 - +0.8 3,086,516 - -1.3 3,086,516 - -0.2 3,086,516 - +0.8 3,086,516 - -0.7 3,086,573 + +0.4 3,086,592 + +0.1 3,086,592 + +0.8 3,086,600 - -0.0 3,086,600 - -0.4
Or see this region's nucleotide sequence