Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07940

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07930 and AO353_07935 are separated by 294 nucleotidesAO353_07935 and AO353_07940 are separated by 59 nucleotidesAO353_07940 and AO353_07945 are separated by 34 nucleotides AO353_07930: AO353_07930 - fructose-1,6-bisphosphate aldolase, at 1,748,729 to 1,749,793 _07930 AO353_07935: AO353_07935 - hypothetical protein, at 1,750,088 to 1,750,420 _07935 AO353_07940: AO353_07940 - hypothetical protein, at 1,750,480 to 1,750,701 _07940 AO353_07945: AO353_07945 - phosphoglycerate kinase, at 1,750,736 to 1,751,899 _07945 Position (kb) 1750 1751Strain fitness (log2 ratio) -2 -1 0 1 2at 1749.856 kb on - strandat 1749.864 kb on + strandat 1749.865 kb on - strandat 1749.865 kb on - strandat 1749.903 kb on - strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.909 kb on + strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.910 kb on - strandat 1749.923 kb on + strandat 1749.923 kb on + strandat 1749.977 kb on + strandat 1749.977 kb on + strandat 1750.089 kb on + strandat 1750.089 kb on + strandat 1750.089 kb on + strandat 1750.089 kb on + strandat 1750.090 kb on - strandat 1750.090 kb on - strandat 1750.090 kb on - strandat 1750.090 kb on - strandat 1750.090 kb on - strandat 1750.099 kb on + strandat 1750.100 kb on - strandat 1750.160 kb on + strand, within AO353_07935at 1750.188 kb on + strand, within AO353_07935at 1750.189 kb on - strand, within AO353_07935at 1750.331 kb on - strand, within AO353_07935at 1750.366 kb on + strand, within AO353_07935at 1750.366 kb on + strand, within AO353_07935at 1750.385 kb on + strand, within AO353_07935at 1750.385 kb on + strand, within AO353_07935at 1750.385 kb on + strand, within AO353_07935at 1750.385 kb on + strand, within AO353_07935at 1750.386 kb on - strand, within AO353_07935at 1750.386 kb on - strand, within AO353_07935at 1750.386 kb on - strand, within AO353_07935at 1750.386 kb on - strand, within AO353_07935at 1750.406 kb on + strandat 1750.520 kb on + strand, within AO353_07940at 1750.521 kb on - strand, within AO353_07940at 1750.521 kb on - strand, within AO353_07940at 1750.521 kb on - strand, within AO353_07940at 1750.524 kb on + strand, within AO353_07940at 1750.524 kb on + strand, within AO353_07940at 1750.592 kb on + strand, within AO353_07940at 1750.663 kb on + strand, within AO353_07940at 1750.663 kb on + strand, within AO353_07940at 1750.663 kb on + strand, within AO353_07940at 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.703 kb on + strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.704 kb on - strandat 1750.737 kb on + strandat 1750.737 kb on + strandat 1750.851 kb on + strandat 1750.851 kb on + strandat 1750.851 kb on + strandat 1750.852 kb on - strandat 1750.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,749,856 - -0.1
1,749,864 + -1.0
1,749,865 - -0.1
1,749,865 - -0.1
1,749,903 - +1.0
1,749,909 + +1.1
1,749,909 + -1.2
1,749,909 + +0.7
1,749,909 + -1.2
1,749,909 + +0.1
1,749,909 + -1.5
1,749,909 + -0.8
1,749,909 + -0.9
1,749,909 + +1.0
1,749,909 + -0.6
1,749,909 + -1.3
1,749,909 + +0.1
1,749,909 + -1.6
1,749,909 + -0.9
1,749,909 + -1.4
1,749,909 + -1.6
1,749,909 + -0.0
1,749,910 - +0.3
1,749,910 - +2.7
1,749,910 - +0.6
1,749,910 - +0.3
1,749,910 - +0.8
1,749,910 - -1.1
1,749,910 - +0.1
1,749,910 - +0.8
1,749,910 - -0.1
1,749,910 - -1.5
1,749,910 - -0.4
1,749,910 - +0.1
1,749,910 - -1.0
1,749,910 - -0.5
1,749,923 + +0.3
1,749,923 + +0.7
1,749,977 + -2.0
1,749,977 + -0.3
1,750,089 + -2.1
1,750,089 + -0.1
1,750,089 + +0.3
1,750,089 + +1.4
1,750,090 - +0.7
1,750,090 - -0.9
1,750,090 - -0.6
1,750,090 - -0.6
1,750,090 - -0.2
1,750,099 + -0.0
1,750,100 - -0.4
1,750,160 + AO353_07935 0.22 -1.5
1,750,188 + AO353_07935 0.30 -0.6
1,750,189 - AO353_07935 0.30 -0.1
1,750,331 - AO353_07935 0.73 +0.1
1,750,366 + AO353_07935 0.83 -0.2
1,750,366 + AO353_07935 0.83 -0.7
1,750,385 + AO353_07935 0.89 -0.1
1,750,385 + AO353_07935 0.89 +0.7
1,750,385 + AO353_07935 0.89 -0.8
1,750,385 + AO353_07935 0.89 +0.1
1,750,386 - AO353_07935 0.89 -0.0
1,750,386 - AO353_07935 0.89 -0.8
1,750,386 - AO353_07935 0.89 +1.2
1,750,386 - AO353_07935 0.89 -1.5
1,750,406 + -0.6
1,750,520 + AO353_07940 0.18 +0.9
1,750,521 - AO353_07940 0.18 -0.1
1,750,521 - AO353_07940 0.18 -0.2
1,750,521 - AO353_07940 0.18 -0.9
1,750,524 + AO353_07940 0.20 -1.6
1,750,524 + AO353_07940 0.20 -0.5
1,750,592 + AO353_07940 0.50 -0.7
1,750,663 + AO353_07940 0.82 -1.1
1,750,663 + AO353_07940 0.82 -1.0
1,750,663 + AO353_07940 0.82 -2.0
1,750,703 + -0.6
1,750,703 + -0.6
1,750,703 + -0.9
1,750,703 + -1.6
1,750,703 + +1.3
1,750,703 + -0.2
1,750,703 + -0.8
1,750,703 + -1.2
1,750,703 + -0.5
1,750,703 + -1.3
1,750,703 + -0.8
1,750,703 + -0.3
1,750,703 + -0.4
1,750,703 + +1.3
1,750,704 - +0.3
1,750,704 - +0.3
1,750,704 - +0.0
1,750,704 - -0.4
1,750,704 - +0.1
1,750,704 - -0.8
1,750,704 - -0.2
1,750,704 - +0.0
1,750,704 - -0.3
1,750,704 - -0.8
1,750,704 - -1.1
1,750,704 - -0.5
1,750,704 - +0.1
1,750,704 - -0.1
1,750,704 - -0.6
1,750,704 - +1.1
1,750,737 + -1.2
1,750,737 + +0.6
1,750,851 + +1.1
1,750,851 + -0.3
1,750,851 + -0.3
1,750,852 - -0.6
1,750,852 - -1.1

Or see this region's nucleotide sequence