Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04965

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04955 and AO353_04960 are separated by 23 nucleotidesAO353_04960 and AO353_04965 are separated by 2 nucleotidesAO353_04965 and AO353_04970 are separated by 68 nucleotides AO353_04955: AO353_04955 - dihydrofolate reductase, at 1,093,521 to 1,094,231 _04955 AO353_04960: AO353_04960 - GTP cyclohydrolase, at 1,094,255 to 1,094,815 _04960 AO353_04965: AO353_04965 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 1,094,818 to 1,095,189 _04965 AO353_04970: AO353_04970 - cell division protein DedD, at 1,095,258 to 1,095,554 _04970 Position (kb) 1094 1095 1096Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1093.854 kb on + strand, within AO353_04955at 1093.962 kb on + strand, within AO353_04955at 1093.962 kb on + strand, within AO353_04955at 1093.963 kb on - strand, within AO353_04955at 1094.059 kb on + strand, within AO353_04955at 1094.059 kb on + strand, within AO353_04955at 1094.059 kb on + strand, within AO353_04955at 1094.060 kb on - strand, within AO353_04955at 1094.060 kb on - strand, within AO353_04955at 1094.060 kb on - strand, within AO353_04955at 1094.089 kb on - strand, within AO353_04955at 1094.149 kb on - strand, within AO353_04955at 1094.149 kb on - strand, within AO353_04955at 1094.163 kb on + strandat 1094.163 kb on + strandat 1094.164 kb on - strandat 1094.164 kb on - strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.181 kb on + strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.182 kb on - strandat 1094.229 kb on + strandat 1094.229 kb on + strandat 1094.229 kb on + strandat 1094.230 kb on - strandat 1094.230 kb on - strandat 1094.230 kb on - strandat 1094.262 kb on + strandat 1094.280 kb on - strandat 1094.293 kb on - strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.295 kb on + strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.296 kb on - strandat 1094.366 kb on + strand, within AO353_04960at 1094.366 kb on + strand, within AO353_04960at 1094.366 kb on + strand, within AO353_04960at 1094.366 kb on + strand, within AO353_04960at 1094.367 kb on - strand, within AO353_04960at 1094.367 kb on - strand, within AO353_04960at 1094.367 kb on - strand, within AO353_04960at 1094.382 kb on - strand, within AO353_04960at 1094.382 kb on - strand, within AO353_04960at 1094.382 kb on - strand, within AO353_04960at 1094.468 kb on + strand, within AO353_04960at 1094.469 kb on - strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.522 kb on + strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.523 kb on - strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.524 kb on + strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.525 kb on - strand, within AO353_04960at 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.813 kb on + strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.814 kb on - strandat 1094.944 kb on + strand, within AO353_04965at 1094.945 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1094.996 kb on - strand, within AO353_04965at 1095.007 kb on - strand, within AO353_04965at 1095.007 kb on - strand, within AO353_04965at 1095.074 kb on + strand, within AO353_04965at 1095.074 kb on + strand, within AO353_04965at 1095.075 kb on - strand, within AO353_04965at 1095.075 kb on - strand, within AO353_04965at 1095.109 kb on + strand, within AO353_04965at 1095.110 kb on - strand, within AO353_04965at 1095.204 kb on + strandat 1095.205 kb on - strandat 1095.205 kb on - strandat 1095.220 kb on + strandat 1095.220 kb on + strandat 1095.220 kb on + strandat 1095.221 kb on - strandat 1095.221 kb on - strandat 1095.221 kb on - strandat 1095.221 kb on - strandat 1095.242 kb on + strandat 1095.243 kb on - strandat 1095.396 kb on + strand, within AO353_04970at 1095.397 kb on - strand, within AO353_04970at 1095.397 kb on - strand, within AO353_04970at 1095.397 kb on - strand, within AO353_04970at 1095.459 kb on + strand, within AO353_04970at 1095.472 kb on - strand, within AO353_04970at 1095.472 kb on - strand, within AO353_04970at 1095.492 kb on + strand, within AO353_04970at 1095.552 kb on + strandat 1095.582 kb on - strandat 1095.582 kb on - strandat 1095.582 kb on - strandat 1095.587 kb on + strandat 1095.587 kb on + strandat 1095.587 kb on + strandat 1095.588 kb on - strandat 1095.588 kb on - strandat 1095.601 kb on + strandat 1095.602 kb on - strandat 1095.602 kb on - strandat 1095.602 kb on - strandat 1095.625 kb on + strandat 1095.625 kb on + strandat 1095.625 kb on + strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.626 kb on - strandat 1095.645 kb on + strandat 1095.645 kb on + strandat 1095.646 kb on - strandat 1095.646 kb on - strandat 1095.735 kb on + strandat 1095.735 kb on + strandat 1095.735 kb on + strandat 1095.735 kb on + strandat 1095.791 kb on - strandat 1095.809 kb on + strandat 1095.810 kb on - strandat 1095.810 kb on - strandat 1095.834 kb on + strandat 1095.834 kb on + strandat 1095.835 kb on - strandat 1095.851 kb on - strandat 1095.979 kb on + strandat 1095.979 kb on + strandat 1095.980 kb on - strandat 1095.980 kb on - strandat 1095.980 kb on - strandat 1095.980 kb on - strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.982 kb on + strandat 1095.983 kb on - strandat 1095.983 kb on - strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.009 kb on + strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strandat 1096.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,093,854 + AO353_04955 0.47 +1.5
1,093,962 + AO353_04955 0.62 -0.8
1,093,962 + AO353_04955 0.62 -0.3
1,093,963 - AO353_04955 0.62 +0.1
1,094,059 + AO353_04955 0.76 +0.5
1,094,059 + AO353_04955 0.76 +0.2
1,094,059 + AO353_04955 0.76 -0.6
1,094,060 - AO353_04955 0.76 -0.8
1,094,060 - AO353_04955 0.76 -0.4
1,094,060 - AO353_04955 0.76 -0.9
1,094,089 - AO353_04955 0.80 -0.1
1,094,149 - AO353_04955 0.88 -0.8
1,094,149 - AO353_04955 0.88 -1.5
1,094,163 + -0.1
1,094,163 + -0.5
1,094,164 - -1.9
1,094,164 - -1.1
1,094,181 + -1.7
1,094,181 + -0.2
1,094,181 + -1.7
1,094,181 + +1.5
1,094,181 + -1.0
1,094,181 + +1.3
1,094,181 + -1.1
1,094,181 + -0.8
1,094,182 - +2.0
1,094,182 - -0.7
1,094,182 - -0.9
1,094,182 - +2.0
1,094,182 - -0.6
1,094,182 - -0.3
1,094,182 - -2.6
1,094,182 - +0.2
1,094,182 - +0.2
1,094,182 - -0.7
1,094,182 - +0.5
1,094,182 - +0.1
1,094,229 + -0.0
1,094,229 + +1.0
1,094,229 + +2.2
1,094,230 - +0.0
1,094,230 - +0.6
1,094,230 - -0.5
1,094,262 + +0.0
1,094,280 - -0.1
1,094,293 - +0.2
1,094,295 + +0.5
1,094,295 + +0.7
1,094,295 + -0.1
1,094,295 + +0.5
1,094,295 + -0.5
1,094,296 - -2.1
1,094,296 - -0.4
1,094,296 - +0.9
1,094,296 - -1.5
1,094,296 - -0.0
1,094,296 - +0.2
1,094,366 + AO353_04960 0.20 +0.0
1,094,366 + AO353_04960 0.20 +0.3
1,094,366 + AO353_04960 0.20 +0.6
1,094,366 + AO353_04960 0.20 +1.3
1,094,367 - AO353_04960 0.20 +0.2
1,094,367 - AO353_04960 0.20 -0.5
1,094,367 - AO353_04960 0.20 +0.5
1,094,382 - AO353_04960 0.23 +0.5
1,094,382 - AO353_04960 0.23 -0.5
1,094,382 - AO353_04960 0.23 -0.7
1,094,468 + AO353_04960 0.38 +0.2
1,094,469 - AO353_04960 0.38 -0.1
1,094,522 + AO353_04960 0.48 +0.2
1,094,522 + AO353_04960 0.48 +1.7
1,094,522 + AO353_04960 0.48 +0.3
1,094,522 + AO353_04960 0.48 +0.9
1,094,522 + AO353_04960 0.48 +0.5
1,094,522 + AO353_04960 0.48 +0.5
1,094,522 + AO353_04960 0.48 -1.1
1,094,522 + AO353_04960 0.48 -0.7
1,094,522 + AO353_04960 0.48 +3.3
1,094,522 + AO353_04960 0.48 +0.1
1,094,523 - AO353_04960 0.48 +1.5
1,094,523 - AO353_04960 0.48 +0.2
1,094,523 - AO353_04960 0.48 -0.6
1,094,523 - AO353_04960 0.48 -1.0
1,094,523 - AO353_04960 0.48 -0.1
1,094,523 - AO353_04960 0.48 +0.0
1,094,523 - AO353_04960 0.48 -0.9
1,094,523 - AO353_04960 0.48 -0.6
1,094,523 - AO353_04960 0.48 -1.5
1,094,523 - AO353_04960 0.48 +0.6
1,094,523 - AO353_04960 0.48 -1.5
1,094,523 - AO353_04960 0.48 -1.0
1,094,523 - AO353_04960 0.48 +0.2
1,094,524 + AO353_04960 0.48 +0.1
1,094,524 + AO353_04960 0.48 +1.1
1,094,524 + AO353_04960 0.48 +1.5
1,094,524 + AO353_04960 0.48 -0.8
1,094,524 + AO353_04960 0.48 -0.7
1,094,524 + AO353_04960 0.48 +0.9
1,094,524 + AO353_04960 0.48 -0.8
1,094,524 + AO353_04960 0.48 +0.5
1,094,524 + AO353_04960 0.48 -0.5
1,094,524 + AO353_04960 0.48 -0.1
1,094,524 + AO353_04960 0.48 -1.4
1,094,524 + AO353_04960 0.48 -0.9
1,094,524 + AO353_04960 0.48 +0.9
1,094,524 + AO353_04960 0.48 +0.3
1,094,525 - AO353_04960 0.48 -1.2
1,094,525 - AO353_04960 0.48 +0.3
1,094,525 - AO353_04960 0.48 -0.4
1,094,525 - AO353_04960 0.48 -0.2
1,094,525 - AO353_04960 0.48 -0.1
1,094,525 - AO353_04960 0.48 -2.5
1,094,525 - AO353_04960 0.48 -2.3
1,094,525 - AO353_04960 0.48 -0.1
1,094,525 - AO353_04960 0.48 +1.0
1,094,525 - AO353_04960 0.48 +0.6
1,094,525 - AO353_04960 0.48 -1.4
1,094,525 - AO353_04960 0.48 -1.4
1,094,525 - AO353_04960 0.48 -0.7
1,094,525 - AO353_04960 0.48 -0.1
1,094,525 - AO353_04960 0.48 +0.8
1,094,813 + -2.2
1,094,813 + -1.5
1,094,813 + -1.3
1,094,813 + +0.1
1,094,813 + -0.8
1,094,813 + -1.4
1,094,813 + -0.3
1,094,813 + +0.0
1,094,813 + -0.7
1,094,813 + -1.1
1,094,813 + +0.5
1,094,814 - -0.7
1,094,814 - -0.1
1,094,814 - -1.0
1,094,814 - -0.5
1,094,814 - -0.1
1,094,814 - +1.5
1,094,814 - +1.0
1,094,944 + AO353_04965 0.34 -1.3
1,094,945 - AO353_04965 0.34 -0.8
1,094,996 - AO353_04965 0.48 +1.5
1,094,996 - AO353_04965 0.48 -0.7
1,094,996 - AO353_04965 0.48 -1.1
1,094,996 - AO353_04965 0.48 -0.6
1,095,007 - AO353_04965 0.51 -1.3
1,095,007 - AO353_04965 0.51 -0.0
1,095,074 + AO353_04965 0.69 -1.4
1,095,074 + AO353_04965 0.69 +0.3
1,095,075 - AO353_04965 0.69 -1.4
1,095,075 - AO353_04965 0.69 -1.5
1,095,109 + AO353_04965 0.78 -0.9
1,095,110 - AO353_04965 0.78 -0.1
1,095,204 + -0.3
1,095,205 - +2.6
1,095,205 - -0.4
1,095,220 + -0.3
1,095,220 + -0.7
1,095,220 + -0.4
1,095,221 - -0.5
1,095,221 - -0.5
1,095,221 - -0.9
1,095,221 - +1.3
1,095,242 + -1.4
1,095,243 - +0.5
1,095,396 + AO353_04970 0.46 -2.1
1,095,397 - AO353_04970 0.47 -0.3
1,095,397 - AO353_04970 0.47 -1.5
1,095,397 - AO353_04970 0.47 -0.7
1,095,459 + AO353_04970 0.68 +1.1
1,095,472 - AO353_04970 0.72 -0.7
1,095,472 - AO353_04970 0.72 +0.8
1,095,492 + AO353_04970 0.79 -1.9
1,095,552 + -0.1
1,095,582 - -0.5
1,095,582 - -1.0
1,095,582 - +0.0
1,095,587 + -0.2
1,095,587 + +0.0
1,095,587 + -0.8
1,095,588 - +0.9
1,095,588 - -0.7
1,095,601 + +2.7
1,095,602 - +0.3
1,095,602 - -0.3
1,095,602 - -0.1
1,095,625 + -0.3
1,095,625 + +0.5
1,095,625 + +1.0
1,095,626 - -0.7
1,095,626 - -0.0
1,095,626 - -1.4
1,095,626 - +2.0
1,095,626 - -0.1
1,095,626 - +0.5
1,095,645 + +1.0
1,095,645 + +1.5
1,095,646 - -0.1
1,095,646 - -0.2
1,095,735 + -0.9
1,095,735 + +1.8
1,095,735 + +0.4
1,095,735 + -1.4
1,095,791 - -0.1
1,095,809 + +0.8
1,095,810 - +1.2
1,095,810 - +1.9
1,095,834 + -0.4
1,095,834 + -0.1
1,095,835 - +0.5
1,095,851 - -0.1
1,095,979 + -0.7
1,095,979 + -0.4
1,095,980 - -1.4
1,095,980 - -0.9
1,095,980 - +0.1
1,095,980 - -1.4
1,095,982 + +0.2
1,095,982 + -0.0
1,095,982 + +0.8
1,095,982 + +1.0
1,095,982 + -0.5
1,095,982 + +1.7
1,095,982 + -0.0
1,095,982 + +1.0
1,095,982 + -0.0
1,095,982 + +0.3
1,095,982 + +1.0
1,095,983 - -0.2
1,095,983 - +0.1
1,096,009 + -0.6
1,096,009 + +1.1
1,096,009 + -0.0
1,096,009 + +0.0
1,096,009 + -0.2
1,096,010 - +0.1
1,096,010 - -0.7
1,096,010 - +0.4
1,096,010 - +0.4
1,096,010 - +0.3
1,096,010 - -0.9

Or see this region's nucleotide sequence