Experiment: L-Histidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04955 and AO353_04960 are separated by 23 nucleotides AO353_04960 and AO353_04965 are separated by 2 nucleotides AO353_04965 and AO353_04970 are separated by 68 nucleotides
AO353_04955: AO353_04955 - dihydrofolate reductase, at 1,093,521 to 1,094,231
_04955
AO353_04960: AO353_04960 - GTP cyclohydrolase, at 1,094,255 to 1,094,815
_04960
AO353_04965: AO353_04965 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 1,094,818 to 1,095,189
_04965
AO353_04970: AO353_04970 - cell division protein DedD, at 1,095,258 to 1,095,554
_04970
Position (kb)
1094
1095
1096 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1093.854 kb on + strand, within AO353_04955 at 1093.962 kb on + strand, within AO353_04955 at 1093.962 kb on + strand, within AO353_04955 at 1093.963 kb on - strand, within AO353_04955 at 1094.059 kb on + strand, within AO353_04955 at 1094.059 kb on + strand, within AO353_04955 at 1094.059 kb on + strand, within AO353_04955 at 1094.060 kb on - strand, within AO353_04955 at 1094.060 kb on - strand, within AO353_04955 at 1094.060 kb on - strand, within AO353_04955 at 1094.089 kb on - strand, within AO353_04955 at 1094.149 kb on - strand, within AO353_04955 at 1094.149 kb on - strand, within AO353_04955 at 1094.163 kb on + strand at 1094.163 kb on + strand at 1094.164 kb on - strand at 1094.164 kb on - strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.181 kb on + strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.182 kb on - strand at 1094.229 kb on + strand at 1094.229 kb on + strand at 1094.229 kb on + strand at 1094.230 kb on - strand at 1094.230 kb on - strand at 1094.230 kb on - strand at 1094.262 kb on + strand at 1094.280 kb on - strand at 1094.293 kb on - strand at 1094.295 kb on + strand at 1094.295 kb on + strand at 1094.295 kb on + strand at 1094.295 kb on + strand at 1094.295 kb on + strand at 1094.296 kb on - strand at 1094.296 kb on - strand at 1094.296 kb on - strand at 1094.296 kb on - strand at 1094.296 kb on - strand at 1094.296 kb on - strand at 1094.366 kb on + strand, within AO353_04960 at 1094.366 kb on + strand, within AO353_04960 at 1094.366 kb on + strand, within AO353_04960 at 1094.366 kb on + strand, within AO353_04960 at 1094.367 kb on - strand, within AO353_04960 at 1094.367 kb on - strand, within AO353_04960 at 1094.367 kb on - strand, within AO353_04960 at 1094.382 kb on - strand, within AO353_04960 at 1094.382 kb on - strand, within AO353_04960 at 1094.382 kb on - strand, within AO353_04960 at 1094.468 kb on + strand, within AO353_04960 at 1094.469 kb on - strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.522 kb on + strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.523 kb on - strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.524 kb on + strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.525 kb on - strand, within AO353_04960 at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.813 kb on + strand at 1094.814 kb on - strand at 1094.814 kb on - strand at 1094.814 kb on - strand at 1094.814 kb on - strand at 1094.814 kb on - strand at 1094.814 kb on - strand at 1094.814 kb on - strand at 1094.944 kb on + strand, within AO353_04965 at 1094.945 kb on - strand, within AO353_04965 at 1094.996 kb on - strand, within AO353_04965 at 1094.996 kb on - strand, within AO353_04965 at 1094.996 kb on - strand, within AO353_04965 at 1094.996 kb on - strand, within AO353_04965 at 1095.007 kb on - strand, within AO353_04965 at 1095.007 kb on - strand, within AO353_04965 at 1095.074 kb on + strand, within AO353_04965 at 1095.074 kb on + strand, within AO353_04965 at 1095.075 kb on - strand, within AO353_04965 at 1095.075 kb on - strand, within AO353_04965 at 1095.109 kb on + strand, within AO353_04965 at 1095.110 kb on - strand, within AO353_04965 at 1095.204 kb on + strand at 1095.205 kb on - strand at 1095.205 kb on - strand at 1095.220 kb on + strand at 1095.220 kb on + strand at 1095.220 kb on + strand at 1095.221 kb on - strand at 1095.221 kb on - strand at 1095.221 kb on - strand at 1095.221 kb on - strand at 1095.242 kb on + strand at 1095.243 kb on - strand at 1095.396 kb on + strand, within AO353_04970 at 1095.397 kb on - strand, within AO353_04970 at 1095.397 kb on - strand, within AO353_04970 at 1095.397 kb on - strand, within AO353_04970 at 1095.459 kb on + strand, within AO353_04970 at 1095.472 kb on - strand, within AO353_04970 at 1095.472 kb on - strand, within AO353_04970 at 1095.492 kb on + strand, within AO353_04970 at 1095.552 kb on + strand at 1095.582 kb on - strand at 1095.582 kb on - strand at 1095.582 kb on - strand at 1095.587 kb on + strand at 1095.587 kb on + strand at 1095.587 kb on + strand at 1095.588 kb on - strand at 1095.588 kb on - strand at 1095.601 kb on + strand at 1095.602 kb on - strand at 1095.602 kb on - strand at 1095.602 kb on - strand at 1095.625 kb on + strand at 1095.625 kb on + strand at 1095.625 kb on + strand at 1095.626 kb on - strand at 1095.626 kb on - strand at 1095.626 kb on - strand at 1095.626 kb on - strand at 1095.626 kb on - strand at 1095.626 kb on - strand at 1095.645 kb on + strand at 1095.645 kb on + strand at 1095.646 kb on - strand at 1095.646 kb on - strand at 1095.735 kb on + strand at 1095.735 kb on + strand at 1095.735 kb on + strand at 1095.735 kb on + strand at 1095.791 kb on - strand at 1095.809 kb on + strand at 1095.810 kb on - strand at 1095.810 kb on - strand at 1095.834 kb on + strand at 1095.834 kb on + strand at 1095.835 kb on - strand at 1095.851 kb on - strand at 1095.979 kb on + strand at 1095.979 kb on + strand at 1095.980 kb on - strand at 1095.980 kb on - strand at 1095.980 kb on - strand at 1095.980 kb on - strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.982 kb on + strand at 1095.983 kb on - strand at 1095.983 kb on - strand at 1096.009 kb on + strand at 1096.009 kb on + strand at 1096.009 kb on + strand at 1096.009 kb on + strand at 1096.009 kb on + strand at 1096.010 kb on - strand at 1096.010 kb on - strand at 1096.010 kb on - strand at 1096.010 kb on - strand at 1096.010 kb on - strand at 1096.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (C) remove 1,093,854 + AO353_04955 0.47 +1.5 1,093,962 + AO353_04955 0.62 -0.8 1,093,962 + AO353_04955 0.62 -0.3 1,093,963 - AO353_04955 0.62 +0.1 1,094,059 + AO353_04955 0.76 +0.5 1,094,059 + AO353_04955 0.76 +0.2 1,094,059 + AO353_04955 0.76 -0.6 1,094,060 - AO353_04955 0.76 -0.8 1,094,060 - AO353_04955 0.76 -0.4 1,094,060 - AO353_04955 0.76 -0.9 1,094,089 - AO353_04955 0.80 -0.1 1,094,149 - AO353_04955 0.88 -0.8 1,094,149 - AO353_04955 0.88 -1.5 1,094,163 + -0.1 1,094,163 + -0.5 1,094,164 - -1.9 1,094,164 - -1.1 1,094,181 + -1.7 1,094,181 + -0.2 1,094,181 + -1.7 1,094,181 + +1.5 1,094,181 + -1.0 1,094,181 + +1.3 1,094,181 + -1.1 1,094,181 + -0.8 1,094,182 - +2.0 1,094,182 - -0.7 1,094,182 - -0.9 1,094,182 - +2.0 1,094,182 - -0.6 1,094,182 - -0.3 1,094,182 - -2.6 1,094,182 - +0.2 1,094,182 - +0.2 1,094,182 - -0.7 1,094,182 - +0.5 1,094,182 - +0.1 1,094,229 + -0.0 1,094,229 + +1.0 1,094,229 + +2.2 1,094,230 - +0.0 1,094,230 - +0.6 1,094,230 - -0.5 1,094,262 + +0.0 1,094,280 - -0.1 1,094,293 - +0.2 1,094,295 + +0.5 1,094,295 + +0.7 1,094,295 + -0.1 1,094,295 + +0.5 1,094,295 + -0.5 1,094,296 - -2.1 1,094,296 - -0.4 1,094,296 - +0.9 1,094,296 - -1.5 1,094,296 - -0.0 1,094,296 - +0.2 1,094,366 + AO353_04960 0.20 +0.0 1,094,366 + AO353_04960 0.20 +0.3 1,094,366 + AO353_04960 0.20 +0.6 1,094,366 + AO353_04960 0.20 +1.3 1,094,367 - AO353_04960 0.20 +0.2 1,094,367 - AO353_04960 0.20 -0.5 1,094,367 - AO353_04960 0.20 +0.5 1,094,382 - AO353_04960 0.23 +0.5 1,094,382 - AO353_04960 0.23 -0.5 1,094,382 - AO353_04960 0.23 -0.7 1,094,468 + AO353_04960 0.38 +0.2 1,094,469 - AO353_04960 0.38 -0.1 1,094,522 + AO353_04960 0.48 +0.2 1,094,522 + AO353_04960 0.48 +1.7 1,094,522 + AO353_04960 0.48 +0.3 1,094,522 + AO353_04960 0.48 +0.9 1,094,522 + AO353_04960 0.48 +0.5 1,094,522 + AO353_04960 0.48 +0.5 1,094,522 + AO353_04960 0.48 -1.1 1,094,522 + AO353_04960 0.48 -0.7 1,094,522 + AO353_04960 0.48 +3.3 1,094,522 + AO353_04960 0.48 +0.1 1,094,523 - AO353_04960 0.48 +1.5 1,094,523 - AO353_04960 0.48 +0.2 1,094,523 - AO353_04960 0.48 -0.6 1,094,523 - AO353_04960 0.48 -1.0 1,094,523 - AO353_04960 0.48 -0.1 1,094,523 - AO353_04960 0.48 +0.0 1,094,523 - AO353_04960 0.48 -0.9 1,094,523 - AO353_04960 0.48 -0.6 1,094,523 - AO353_04960 0.48 -1.5 1,094,523 - AO353_04960 0.48 +0.6 1,094,523 - AO353_04960 0.48 -1.5 1,094,523 - AO353_04960 0.48 -1.0 1,094,523 - AO353_04960 0.48 +0.2 1,094,524 + AO353_04960 0.48 +0.1 1,094,524 + AO353_04960 0.48 +1.1 1,094,524 + AO353_04960 0.48 +1.5 1,094,524 + AO353_04960 0.48 -0.8 1,094,524 + AO353_04960 0.48 -0.7 1,094,524 + AO353_04960 0.48 +0.9 1,094,524 + AO353_04960 0.48 -0.8 1,094,524 + AO353_04960 0.48 +0.5 1,094,524 + AO353_04960 0.48 -0.5 1,094,524 + AO353_04960 0.48 -0.1 1,094,524 + AO353_04960 0.48 -1.4 1,094,524 + AO353_04960 0.48 -0.9 1,094,524 + AO353_04960 0.48 +0.9 1,094,524 + AO353_04960 0.48 +0.3 1,094,525 - AO353_04960 0.48 -1.2 1,094,525 - AO353_04960 0.48 +0.3 1,094,525 - AO353_04960 0.48 -0.4 1,094,525 - AO353_04960 0.48 -0.2 1,094,525 - AO353_04960 0.48 -0.1 1,094,525 - AO353_04960 0.48 -2.5 1,094,525 - AO353_04960 0.48 -2.3 1,094,525 - AO353_04960 0.48 -0.1 1,094,525 - AO353_04960 0.48 +1.0 1,094,525 - AO353_04960 0.48 +0.6 1,094,525 - AO353_04960 0.48 -1.4 1,094,525 - AO353_04960 0.48 -1.4 1,094,525 - AO353_04960 0.48 -0.7 1,094,525 - AO353_04960 0.48 -0.1 1,094,525 - AO353_04960 0.48 +0.8 1,094,813 + -2.2 1,094,813 + -1.5 1,094,813 + -1.3 1,094,813 + +0.1 1,094,813 + -0.8 1,094,813 + -1.4 1,094,813 + -0.3 1,094,813 + +0.0 1,094,813 + -0.7 1,094,813 + -1.1 1,094,813 + +0.5 1,094,814 - -0.7 1,094,814 - -0.1 1,094,814 - -1.0 1,094,814 - -0.5 1,094,814 - -0.1 1,094,814 - +1.5 1,094,814 - +1.0 1,094,944 + AO353_04965 0.34 -1.3 1,094,945 - AO353_04965 0.34 -0.8 1,094,996 - AO353_04965 0.48 +1.5 1,094,996 - AO353_04965 0.48 -0.7 1,094,996 - AO353_04965 0.48 -1.1 1,094,996 - AO353_04965 0.48 -0.6 1,095,007 - AO353_04965 0.51 -1.3 1,095,007 - AO353_04965 0.51 -0.0 1,095,074 + AO353_04965 0.69 -1.4 1,095,074 + AO353_04965 0.69 +0.3 1,095,075 - AO353_04965 0.69 -1.4 1,095,075 - AO353_04965 0.69 -1.5 1,095,109 + AO353_04965 0.78 -0.9 1,095,110 - AO353_04965 0.78 -0.1 1,095,204 + -0.3 1,095,205 - +2.6 1,095,205 - -0.4 1,095,220 + -0.3 1,095,220 + -0.7 1,095,220 + -0.4 1,095,221 - -0.5 1,095,221 - -0.5 1,095,221 - -0.9 1,095,221 - +1.3 1,095,242 + -1.4 1,095,243 - +0.5 1,095,396 + AO353_04970 0.46 -2.1 1,095,397 - AO353_04970 0.47 -0.3 1,095,397 - AO353_04970 0.47 -1.5 1,095,397 - AO353_04970 0.47 -0.7 1,095,459 + AO353_04970 0.68 +1.1 1,095,472 - AO353_04970 0.72 -0.7 1,095,472 - AO353_04970 0.72 +0.8 1,095,492 + AO353_04970 0.79 -1.9 1,095,552 + -0.1 1,095,582 - -0.5 1,095,582 - -1.0 1,095,582 - +0.0 1,095,587 + -0.2 1,095,587 + +0.0 1,095,587 + -0.8 1,095,588 - +0.9 1,095,588 - -0.7 1,095,601 + +2.7 1,095,602 - +0.3 1,095,602 - -0.3 1,095,602 - -0.1 1,095,625 + -0.3 1,095,625 + +0.5 1,095,625 + +1.0 1,095,626 - -0.7 1,095,626 - -0.0 1,095,626 - -1.4 1,095,626 - +2.0 1,095,626 - -0.1 1,095,626 - +0.5 1,095,645 + +1.0 1,095,645 + +1.5 1,095,646 - -0.1 1,095,646 - -0.2 1,095,735 + -0.9 1,095,735 + +1.8 1,095,735 + +0.4 1,095,735 + -1.4 1,095,791 - -0.1 1,095,809 + +0.8 1,095,810 - +1.2 1,095,810 - +1.9 1,095,834 + -0.4 1,095,834 + -0.1 1,095,835 - +0.5 1,095,851 - -0.1 1,095,979 + -0.7 1,095,979 + -0.4 1,095,980 - -1.4 1,095,980 - -0.9 1,095,980 - +0.1 1,095,980 - -1.4 1,095,982 + +0.2 1,095,982 + -0.0 1,095,982 + +0.8 1,095,982 + +1.0 1,095,982 + -0.5 1,095,982 + +1.7 1,095,982 + -0.0 1,095,982 + +1.0 1,095,982 + -0.0 1,095,982 + +0.3 1,095,982 + +1.0 1,095,983 - -0.2 1,095,983 - +0.1 1,096,009 + -0.6 1,096,009 + +1.1 1,096,009 + -0.0 1,096,009 + +0.0 1,096,009 + -0.2 1,096,010 - +0.1 1,096,010 - -0.7 1,096,010 - +0.4 1,096,010 - +0.4 1,096,010 - +0.3 1,096,010 - -0.9
Or see this region's nucleotide sequence