Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04060

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04055 and AO353_04060 are separated by 120 nucleotidesAO353_04060 and AO353_04065 overlap by 4 nucleotides AO353_04055: AO353_04055 - methionine--tRNA ligase, at 871,952 to 874,003 _04055 AO353_04060: AO353_04060 - NADH:quinone oxidoreductase, at 874,124 to 874,711 _04060 AO353_04065: AO353_04065 - electron transporter RnfB, at 874,708 to 875,922 _04065 Position (kb) 874 875Strain fitness (log2 ratio) -2 -1 0 1 2at 873.691 kb on + strand, within AO353_04055at 873.691 kb on + strand, within AO353_04055at 873.691 kb on + strand, within AO353_04055at 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.001 kb on + strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.002 kb on - strandat 874.060 kb on + strandat 874.075 kb on + strandat 874.089 kb on + strandat 874.089 kb on + strandat 874.168 kb on + strandat 874.168 kb on + strandat 874.313 kb on + strand, within AO353_04060at 874.313 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.352 kb on + strand, within AO353_04060at 874.353 kb on - strand, within AO353_04060at 874.353 kb on - strand, within AO353_04060at 874.380 kb on + strand, within AO353_04060at 874.380 kb on + strand, within AO353_04060at 874.381 kb on - strand, within AO353_04060at 874.381 kb on - strand, within AO353_04060at 874.390 kb on + strand, within AO353_04060at 874.391 kb on - strand, within AO353_04060at 874.523 kb on + strand, within AO353_04060at 874.524 kb on - strand, within AO353_04060at 874.530 kb on + strand, within AO353_04060at 874.530 kb on + strand, within AO353_04060at 874.530 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.536 kb on + strand, within AO353_04060at 874.537 kb on - strand, within AO353_04060at 874.537 kb on - strand, within AO353_04060at 874.537 kb on - strandat 874.537 kb on - strand, within AO353_04060at 874.725 kb on + strandat 874.725 kb on + strandat 874.725 kb on + strandat 874.787 kb on - strandat 874.933 kb on - strand, within AO353_04065at 874.986 kb on - strand, within AO353_04065at 875.060 kb on + strand, within AO353_04065at 875.060 kb on + strand, within AO353_04065at 875.061 kb on - strand, within AO353_04065at 875.061 kb on - strand, within AO353_04065at 875.099 kb on + strand, within AO353_04065at 875.100 kb on - strand, within AO353_04065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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873,691 + AO353_04055 0.85 +0.1
873,691 + AO353_04055 0.85 -0.6
873,691 + AO353_04055 0.85 -1.5
874,001 + +0.9
874,001 + -1.1
874,001 + +0.7
874,001 + -1.6
874,001 + +0.9
874,001 + -1.1
874,001 + -0.8
874,001 + -0.1
874,001 + -0.4
874,002 - +0.3
874,002 - -0.0
874,002 - +0.3
874,002 - -1.3
874,002 - +0.3
874,002 - +0.3
874,002 - +1.3
874,002 - +0.4
874,002 - -0.2
874,002 - +0.9
874,002 - -0.4
874,002 - -0.0
874,002 - -0.4
874,002 - -0.5
874,002 - -0.2
874,002 - +0.3
874,002 - -0.7
874,002 - +0.9
874,002 - -0.2
874,002 - +1.0
874,060 + +0.1
874,075 + +0.5
874,089 + +0.2
874,089 + +0.5
874,168 + -0.2
874,168 + +0.8
874,313 + AO353_04060 0.32 +0.9
874,313 + AO353_04060 0.32 +0.6
874,352 + AO353_04060 0.39 +0.8
874,352 + AO353_04060 0.39 +0.4
874,352 + AO353_04060 0.39 +0.2
874,352 + AO353_04060 0.39 +0.8
874,353 - AO353_04060 0.39 -1.0
874,353 - AO353_04060 0.39 -0.9
874,380 + AO353_04060 0.44 -0.5
874,380 + AO353_04060 0.44 +0.0
874,381 - AO353_04060 0.44 -0.5
874,381 - AO353_04060 0.44 +0.6
874,390 + AO353_04060 0.45 +0.1
874,391 - AO353_04060 0.45 +1.1
874,523 + AO353_04060 0.68 +1.0
874,524 - AO353_04060 0.68 -0.0
874,530 + AO353_04060 0.69 -0.1
874,530 + AO353_04060 0.69 +0.1
874,530 + AO353_04060 0.69 +2.7
874,536 + AO353_04060 0.70 +0.6
874,536 + AO353_04060 0.70 +0.8
874,536 + AO353_04060 0.70 +0.1
874,536 + AO353_04060 0.70 -0.5
874,536 + AO353_04060 0.70 +0.7
874,537 - AO353_04060 0.70 +1.0
874,537 - AO353_04060 0.70 -1.5
874,537 - -0.7
874,537 - AO353_04060 0.70 +0.9
874,725 + -0.2
874,725 + -0.2
874,725 + -0.1
874,787 - -0.1
874,933 - AO353_04065 0.19 +1.0
874,986 - AO353_04065 0.23 -0.7
875,060 + AO353_04065 0.29 -1.3
875,060 + AO353_04065 0.29 +0.2
875,061 - AO353_04065 0.29 -2.4
875,061 - AO353_04065 0.29 +0.1
875,099 + AO353_04065 0.32 -0.1
875,100 - AO353_04065 0.32 -1.2

Or see this region's nucleotide sequence