Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17355

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17350 and ABZR87_RS17355 are separated by 168 nucleotidesABZR87_RS17355 and ABZR87_RS17360 are separated by 63 nucleotides ABZR87_RS17350: ABZR87_RS17350 - OXA-60 family carbapenem-hydrolyzing class D beta-lactamase, at 247,474 to 248,289 _RS17350 ABZR87_RS17355: ABZR87_RS17355 - hypothetical protein, at 248,458 to 248,901 _RS17355 ABZR87_RS17360: ABZR87_RS17360 - glucan biosynthesis protein, at 248,965 to 250,578 _RS17360 Position (kb) 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 247.625 kb on + strand, within ABZR87_RS17350at 247.625 kb on + strand, within ABZR87_RS17350at 247.625 kb on + strand, within ABZR87_RS17350at 247.626 kb on - strand, within ABZR87_RS17350at 247.626 kb on - strand, within ABZR87_RS17350at 247.644 kb on + strand, within ABZR87_RS17350at 247.644 kb on + strand, within ABZR87_RS17350at 247.644 kb on + strand, within ABZR87_RS17350at 247.645 kb on - strand, within ABZR87_RS17350at 247.645 kb on - strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.648 kb on + strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.649 kb on - strand, within ABZR87_RS17350at 247.789 kb on + strand, within ABZR87_RS17350at 247.789 kb on + strand, within ABZR87_RS17350at 247.789 kb on + strand, within ABZR87_RS17350at 247.789 kb on + strand, within ABZR87_RS17350at 247.789 kb on + strand, within ABZR87_RS17350at 247.790 kb on - strand, within ABZR87_RS17350at 247.790 kb on - strand, within ABZR87_RS17350at 247.790 kb on - strand, within ABZR87_RS17350at 247.790 kb on - strand, within ABZR87_RS17350at 247.853 kb on - strand, within ABZR87_RS17350at 247.897 kb on + strand, within ABZR87_RS17350at 247.898 kb on - strand, within ABZR87_RS17350at 247.898 kb on - strand, within ABZR87_RS17350at 247.916 kb on - strand, within ABZR87_RS17350at 248.183 kb on - strand, within ABZR87_RS17350at 248.303 kb on - strandat 248.303 kb on - strandat 248.303 kb on - strandat 248.303 kb on - strandat 248.303 kb on - strandat 248.303 kb on - strandat 248.312 kb on + strandat 248.313 kb on - strandat 248.328 kb on - strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.457 kb on + strandat 248.458 kb on - strandat 248.458 kb on - strandat 248.458 kb on - strandat 248.458 kb on - strandat 248.470 kb on + strandat 248.470 kb on + strandat 248.471 kb on - strandat 248.471 kb on - strandat 248.471 kb on - strandat 248.551 kb on + strand, within ABZR87_RS17355at 248.552 kb on - strand, within ABZR87_RS17355at 248.552 kb on - strand, within ABZR87_RS17355at 248.552 kb on - strand, within ABZR87_RS17355at 248.791 kb on + strand, within ABZR87_RS17355at 248.893 kb on + strandat 248.894 kb on - strandat 248.900 kb on - strandat 249.005 kb on + strandat 249.005 kb on + strandat 249.006 kb on - strandat 249.006 kb on - strandat 249.006 kb on - strandat 249.006 kb on - strandat 249.011 kb on + strandat 249.011 kb on + strandat 249.011 kb on + strandat 249.012 kb on - strandat 249.152 kb on + strand, within ABZR87_RS17360at 249.152 kb on + strand, within ABZR87_RS17360at 249.152 kb on + strand, within ABZR87_RS17360at 249.153 kb on - strand, within ABZR87_RS17360at 249.153 kb on - strand, within ABZR87_RS17360at 249.153 kb on - strand, within ABZR87_RS17360at 249.153 kb on - strand, within ABZR87_RS17360at 249.153 kb on - strand, within ABZR87_RS17360at 249.153 kb on - strand, within ABZR87_RS17360at 249.542 kb on + strand, within ABZR87_RS17360at 249.543 kb on - strand, within ABZR87_RS17360at 249.746 kb on + strand, within ABZR87_RS17360at 249.746 kb on + strand, within ABZR87_RS17360at 249.747 kb on - strand, within ABZR87_RS17360at 249.854 kb on + strand, within ABZR87_RS17360at 249.888 kb on + strand, within ABZR87_RS17360at 249.888 kb on + strand, within ABZR87_RS17360at 249.889 kb on - strand, within ABZR87_RS17360at 249.890 kb on + strand, within ABZR87_RS17360at 249.890 kb on + strand, within ABZR87_RS17360at 249.891 kb on - strand, within ABZR87_RS17360at 249.891 kb on - strand, within ABZR87_RS17360at 249.891 kb on - strand, within ABZR87_RS17360at 249.891 kb on - strand, within ABZR87_RS17360at 249.891 kb on - strand, within ABZR87_RS17360at 249.892 kb on + strand, within ABZR87_RS17360

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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247,625 + ABZR87_RS17350 0.19 -1.6
247,625 + ABZR87_RS17350 0.19 -0.5
247,625 + ABZR87_RS17350 0.19 -0.3
247,626 - ABZR87_RS17350 0.19 -0.3
247,626 - ABZR87_RS17350 0.19 +0.1
247,644 + ABZR87_RS17350 0.21 +0.2
247,644 + ABZR87_RS17350 0.21 +0.6
247,644 + ABZR87_RS17350 0.21 +0.0
247,645 - ABZR87_RS17350 0.21 -0.4
247,645 - ABZR87_RS17350 0.21 -0.1
247,648 + ABZR87_RS17350 0.21 -0.5
247,648 + ABZR87_RS17350 0.21 -0.4
247,648 + ABZR87_RS17350 0.21 +0.4
247,648 + ABZR87_RS17350 0.21 -0.3
247,648 + ABZR87_RS17350 0.21 +0.1
247,648 + ABZR87_RS17350 0.21 -0.1
247,648 + ABZR87_RS17350 0.21 +0.5
247,648 + ABZR87_RS17350 0.21 +0.8
247,648 + ABZR87_RS17350 0.21 +0.1
247,648 + ABZR87_RS17350 0.21 +0.3
247,648 + ABZR87_RS17350 0.21 -0.6
247,648 + ABZR87_RS17350 0.21 -0.0
247,648 + ABZR87_RS17350 0.21 +0.2
247,648 + ABZR87_RS17350 0.21 +0.5
247,648 + ABZR87_RS17350 0.21 -0.7
247,649 - ABZR87_RS17350 0.21 +0.3
247,649 - ABZR87_RS17350 0.21 +0.4
247,649 - ABZR87_RS17350 0.21 -1.2
247,649 - ABZR87_RS17350 0.21 -0.1
247,649 - ABZR87_RS17350 0.21 +0.5
247,649 - ABZR87_RS17350 0.21 -0.1
247,649 - ABZR87_RS17350 0.21 -0.4
247,649 - ABZR87_RS17350 0.21 -0.2
247,789 + ABZR87_RS17350 0.39 -0.0
247,789 + ABZR87_RS17350 0.39 -0.1
247,789 + ABZR87_RS17350 0.39 -0.1
247,789 + ABZR87_RS17350 0.39 +0.4
247,789 + ABZR87_RS17350 0.39 -0.3
247,790 - ABZR87_RS17350 0.39 -0.1
247,790 - ABZR87_RS17350 0.39 -0.7
247,790 - ABZR87_RS17350 0.39 +0.6
247,790 - ABZR87_RS17350 0.39 -0.6
247,853 - ABZR87_RS17350 0.46 +0.4
247,897 + ABZR87_RS17350 0.52 -0.7
247,898 - ABZR87_RS17350 0.52 +1.0
247,898 - ABZR87_RS17350 0.52 -0.5
247,916 - ABZR87_RS17350 0.54 -0.3
248,183 - ABZR87_RS17350 0.87 -0.8
248,303 - -0.1
248,303 - +0.5
248,303 - -0.1
248,303 - -0.7
248,303 - +0.4
248,303 - +0.2
248,312 + +1.6
248,313 - +0.3
248,328 - -0.4
248,457 + -0.6
248,457 + +0.1
248,457 + -0.1
248,457 + -0.3
248,457 + -1.2
248,457 + -0.1
248,457 + +0.5
248,457 + +0.7
248,457 + +0.0
248,457 + +0.7
248,458 - -0.5
248,458 - +0.1
248,458 - +1.7
248,458 - -0.2
248,470 + +0.1
248,470 + +0.8
248,471 - -0.6
248,471 - -0.3
248,471 - +0.1
248,551 + ABZR87_RS17355 0.21 +0.3
248,552 - ABZR87_RS17355 0.21 -0.5
248,552 - ABZR87_RS17355 0.21 -0.5
248,552 - ABZR87_RS17355 0.21 -0.5
248,791 + ABZR87_RS17355 0.75 -0.8
248,893 + +0.2
248,894 - -0.7
248,900 - -0.4
249,005 + -0.1
249,005 + +0.4
249,006 - +0.4
249,006 - +0.5
249,006 - +0.3
249,006 - +1.2
249,011 + +0.3
249,011 + -0.2
249,011 + +0.4
249,012 - +0.6
249,152 + ABZR87_RS17360 0.12 +0.3
249,152 + ABZR87_RS17360 0.12 -0.9
249,152 + ABZR87_RS17360 0.12 +1.1
249,153 - ABZR87_RS17360 0.12 +0.3
249,153 - ABZR87_RS17360 0.12 -0.1
249,153 - ABZR87_RS17360 0.12 +0.8
249,153 - ABZR87_RS17360 0.12 -0.3
249,153 - ABZR87_RS17360 0.12 -0.6
249,153 - ABZR87_RS17360 0.12 +0.4
249,542 + ABZR87_RS17360 0.36 -0.8
249,543 - ABZR87_RS17360 0.36 +2.3
249,746 + ABZR87_RS17360 0.48 -0.8
249,746 + ABZR87_RS17360 0.48 -1.7
249,747 - ABZR87_RS17360 0.48 -2.3
249,854 + ABZR87_RS17360 0.55 -0.1
249,888 + ABZR87_RS17360 0.57 +0.5
249,888 + ABZR87_RS17360 0.57 +0.6
249,889 - ABZR87_RS17360 0.57 +0.4
249,890 + ABZR87_RS17360 0.57 +0.2
249,890 + ABZR87_RS17360 0.57 -0.8
249,891 - ABZR87_RS17360 0.57 -0.0
249,891 - ABZR87_RS17360 0.57 -0.3
249,891 - ABZR87_RS17360 0.57 -0.1
249,891 - ABZR87_RS17360 0.57 -0.4
249,891 - ABZR87_RS17360 0.57 +0.7
249,892 + ABZR87_RS17360 0.57 -0.7

Or see this region's nucleotide sequence