Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13570

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13565 and ABZR87_RS13570 are separated by 9 nucleotidesABZR87_RS13570 and ABZR87_RS13575 are separated by 115 nucleotides ABZR87_RS13565: ABZR87_RS13565 - aldose epimerase, at 2,874,041 to 2,874,979 _RS13565 ABZR87_RS13570: ABZR87_RS13570 - carboxymuconolactone decarboxylase family protein, at 2,874,989 to 2,875,324 _RS13570 ABZR87_RS13575: ABZR87_RS13575 - AraC family transcriptional regulator, at 2,875,440 to 2,876,354 _RS13575 Position (kb) 2874 2875 2876Strain fitness (log2 ratio) -1 0 1at 2874.000 kb on + strandat 2874.000 kb on + strandat 2874.000 kb on + strandat 2874.001 kb on - strandat 2874.001 kb on - strandat 2874.003 kb on + strandat 2874.003 kb on + strandat 2874.003 kb on + strandat 2874.041 kb on - strandat 2874.041 kb on - strandat 2874.041 kb on - strandat 2874.041 kb on - strandat 2874.274 kb on - strand, within ABZR87_RS13565at 2874.458 kb on + strand, within ABZR87_RS13565at 2874.542 kb on + strand, within ABZR87_RS13565at 2874.542 kb on + strand, within ABZR87_RS13565at 2874.543 kb on - strand, within ABZR87_RS13565at 2874.543 kb on - strand, within ABZR87_RS13565at 2874.560 kb on + strand, within ABZR87_RS13565at 2874.560 kb on + strand, within ABZR87_RS13565at 2874.560 kb on + strand, within ABZR87_RS13565at 2874.677 kb on + strand, within ABZR87_RS13565at 2874.677 kb on + strand, within ABZR87_RS13565at 2874.677 kb on + strand, within ABZR87_RS13565at 2874.677 kb on + strand, within ABZR87_RS13565at 2874.678 kb on - strand, within ABZR87_RS13565at 2874.711 kb on - strand, within ABZR87_RS13565at 2874.863 kb on + strand, within ABZR87_RS13565at 2874.863 kb on + strand, within ABZR87_RS13565at 2874.864 kb on - strand, within ABZR87_RS13565at 2874.864 kb on - strand, within ABZR87_RS13565at 2874.864 kb on - strand, within ABZR87_RS13565at 2875.035 kb on + strand, within ABZR87_RS13570at 2875.036 kb on - strand, within ABZR87_RS13570at 2875.141 kb on + strand, within ABZR87_RS13570at 2875.141 kb on + strand, within ABZR87_RS13570at 2875.142 kb on - strand, within ABZR87_RS13570at 2875.142 kb on - strand, within ABZR87_RS13570at 2875.239 kb on + strand, within ABZR87_RS13570at 2875.239 kb on + strand, within ABZR87_RS13570at 2875.240 kb on - strand, within ABZR87_RS13570at 2875.240 kb on - strand, within ABZR87_RS13570at 2875.240 kb on - strand, within ABZR87_RS13570at 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.377 kb on + strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.378 kb on - strandat 2875.662 kb on - strand, within ABZR87_RS13575at 2875.765 kb on + strand, within ABZR87_RS13575at 2875.765 kb on + strand, within ABZR87_RS13575at 2875.766 kb on - strand, within ABZR87_RS13575at 2875.766 kb on - strand, within ABZR87_RS13575at 2875.766 kb on - strand, within ABZR87_RS13575at 2875.766 kb on - strand, within ABZR87_RS13575at 2875.766 kb on - strand, within ABZR87_RS13575at 2875.859 kb on + strand, within ABZR87_RS13575at 2875.859 kb on + strand, within ABZR87_RS13575at 2875.860 kb on - strand, within ABZR87_RS13575at 2875.860 kb on - strand, within ABZR87_RS13575at 2875.860 kb on - strand, within ABZR87_RS13575at 2875.860 kb on - strand, within ABZR87_RS13575at 2876.059 kb on + strand, within ABZR87_RS13575at 2876.059 kb on + strand, within ABZR87_RS13575at 2876.059 kb on + strand, within ABZR87_RS13575at 2876.059 kb on + strand, within ABZR87_RS13575at 2876.059 kb on + strand, within ABZR87_RS13575at 2876.059 kb on + strand, within ABZR87_RS13575at 2876.060 kb on - strand, within ABZR87_RS13575at 2876.060 kb on - strand, within ABZR87_RS13575at 2876.060 kb on - strand, within ABZR87_RS13575at 2876.139 kb on + strand, within ABZR87_RS13575at 2876.139 kb on + strand, within ABZR87_RS13575at 2876.140 kb on - strand, within ABZR87_RS13575at 2876.140 kb on - strand, within ABZR87_RS13575at 2876.197 kb on + strand, within ABZR87_RS13575at 2876.197 kb on + strand, within ABZR87_RS13575at 2876.198 kb on - strand, within ABZR87_RS13575at 2876.231 kb on + strand, within ABZR87_RS13575at 2876.232 kb on - strand, within ABZR87_RS13575at 2876.232 kb on - strand, within ABZR87_RS13575at 2876.232 kb on - strand, within ABZR87_RS13575at 2876.232 kb on - strand, within ABZR87_RS13575

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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2,874,000 + +0.5
2,874,000 + -1.2
2,874,000 + +1.0
2,874,001 - -1.1
2,874,001 - -1.0
2,874,003 + -1.0
2,874,003 + -0.3
2,874,003 + +0.8
2,874,041 - -0.3
2,874,041 - -0.4
2,874,041 - -0.3
2,874,041 - +0.3
2,874,274 - ABZR87_RS13565 0.25 -0.7
2,874,458 + ABZR87_RS13565 0.44 +0.1
2,874,542 + ABZR87_RS13565 0.53 -0.0
2,874,542 + ABZR87_RS13565 0.53 -0.9
2,874,543 - ABZR87_RS13565 0.53 +0.9
2,874,543 - ABZR87_RS13565 0.53 -0.1
2,874,560 + ABZR87_RS13565 0.55 -0.1
2,874,560 + ABZR87_RS13565 0.55 -0.7
2,874,560 + ABZR87_RS13565 0.55 -0.3
2,874,677 + ABZR87_RS13565 0.68 +0.3
2,874,677 + ABZR87_RS13565 0.68 -0.5
2,874,677 + ABZR87_RS13565 0.68 +0.9
2,874,677 + ABZR87_RS13565 0.68 -1.6
2,874,678 - ABZR87_RS13565 0.68 +0.5
2,874,711 - ABZR87_RS13565 0.71 -0.1
2,874,863 + ABZR87_RS13565 0.88 +0.0
2,874,863 + ABZR87_RS13565 0.88 +0.1
2,874,864 - ABZR87_RS13565 0.88 -0.1
2,874,864 - ABZR87_RS13565 0.88 +0.1
2,874,864 - ABZR87_RS13565 0.88 -1.0
2,875,035 + ABZR87_RS13570 0.14 -0.1
2,875,036 - ABZR87_RS13570 0.14 -0.8
2,875,141 + ABZR87_RS13570 0.45 -0.3
2,875,141 + ABZR87_RS13570 0.45 -0.6
2,875,142 - ABZR87_RS13570 0.46 -0.8
2,875,142 - ABZR87_RS13570 0.46 -1.4
2,875,239 + ABZR87_RS13570 0.74 +0.5
2,875,239 + ABZR87_RS13570 0.74 -0.2
2,875,240 - ABZR87_RS13570 0.75 -0.2
2,875,240 - ABZR87_RS13570 0.75 -0.3
2,875,240 - ABZR87_RS13570 0.75 +0.1
2,875,377 + +0.3
2,875,377 + -0.9
2,875,377 + +0.1
2,875,377 + -0.6
2,875,377 + +0.8
2,875,377 + +0.2
2,875,377 + -0.3
2,875,377 + +0.2
2,875,377 + -1.3
2,875,378 - -0.4
2,875,378 - +0.0
2,875,378 - -0.9
2,875,378 - +0.2
2,875,378 - -0.4
2,875,378 - -0.3
2,875,378 - +0.1
2,875,378 - -0.1
2,875,378 - +0.3
2,875,662 - ABZR87_RS13575 0.24 -0.8
2,875,765 + ABZR87_RS13575 0.36 -0.0
2,875,765 + ABZR87_RS13575 0.36 +0.3
2,875,766 - ABZR87_RS13575 0.36 +0.1
2,875,766 - ABZR87_RS13575 0.36 +0.2
2,875,766 - ABZR87_RS13575 0.36 +0.3
2,875,766 - ABZR87_RS13575 0.36 +0.4
2,875,766 - ABZR87_RS13575 0.36 -0.3
2,875,859 + ABZR87_RS13575 0.46 +0.1
2,875,859 + ABZR87_RS13575 0.46 -0.7
2,875,860 - ABZR87_RS13575 0.46 +0.3
2,875,860 - ABZR87_RS13575 0.46 +0.3
2,875,860 - ABZR87_RS13575 0.46 +0.7
2,875,860 - ABZR87_RS13575 0.46 +0.1
2,876,059 + ABZR87_RS13575 0.68 +0.1
2,876,059 + ABZR87_RS13575 0.68 -0.3
2,876,059 + ABZR87_RS13575 0.68 -0.4
2,876,059 + ABZR87_RS13575 0.68 +0.7
2,876,059 + ABZR87_RS13575 0.68 -0.0
2,876,059 + ABZR87_RS13575 0.68 -0.2
2,876,060 - ABZR87_RS13575 0.68 -0.9
2,876,060 - ABZR87_RS13575 0.68 +0.8
2,876,060 - ABZR87_RS13575 0.68 -1.0
2,876,139 + ABZR87_RS13575 0.76 +0.1
2,876,139 + ABZR87_RS13575 0.76 -1.6
2,876,140 - ABZR87_RS13575 0.77 +0.7
2,876,140 - ABZR87_RS13575 0.77 +0.5
2,876,197 + ABZR87_RS13575 0.83 +0.5
2,876,197 + ABZR87_RS13575 0.83 -0.1
2,876,198 - ABZR87_RS13575 0.83 +0.4
2,876,231 + ABZR87_RS13575 0.86 -0.3
2,876,232 - ABZR87_RS13575 0.87 +0.1
2,876,232 - ABZR87_RS13575 0.87 -1.6
2,876,232 - ABZR87_RS13575 0.87 -0.1
2,876,232 - ABZR87_RS13575 0.87 +1.1

Or see this region's nucleotide sequence