Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04855

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04850 and ABZR87_RS04855 are separated by 742 nucleotidesABZR87_RS04855 and ABZR87_RS04860 are separated by 55 nucleotidesABZR87_RS04860 and ABZR87_RS04865 are separated by 10 nucleotides ABZR87_RS04850: ABZR87_RS04850 - hypothetical protein, at 1,018,549 to 1,018,833 _RS04850 ABZR87_RS04855: ABZR87_RS04855 - adenosylhomocysteinase, at 1,019,576 to 1,021,000 _RS04855 ABZR87_RS04860: ABZR87_RS04860 - phage holin family protein, at 1,021,056 to 1,021,400 _RS04860 ABZR87_RS04865: ABZR87_RS04865 - methylenetetrahydrofolate reductase [NAD(P)H], at 1,021,411 to 1,022,241 _RS04865 Position (kb) 1019 1020 1021 1022Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.640 kb on + strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.641 kb on - strand, within ABZR87_RS04850at 1018.686 kb on - strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.703 kb on + strand, within ABZR87_RS04850at 1018.808 kb on + strandat 1018.808 kb on + strandat 1018.809 kb on - strandat 1018.888 kb on + strandat 1018.888 kb on + strandat 1018.888 kb on + strandat 1018.889 kb on - strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.941 kb on + strandat 1018.942 kb on - strandat 1018.942 kb on - strandat 1018.942 kb on - strandat 1018.942 kb on - strandat 1018.969 kb on + strandat 1018.969 kb on + strandat 1018.969 kb on + strandat 1019.000 kb on + strandat 1019.011 kb on + strandat 1019.011 kb on + strandat 1019.012 kb on - strandat 1019.012 kb on - strandat 1019.070 kb on - strandat 1019.128 kb on + strandat 1019.128 kb on + strandat 1019.128 kb on + strandat 1019.129 kb on - strandat 1019.144 kb on + strandat 1019.181 kb on + strandat 1019.181 kb on + strandat 1019.181 kb on + strandat 1019.182 kb on - strandat 1019.182 kb on - strandat 1019.182 kb on - strandat 1019.184 kb on - strandat 1019.381 kb on + strandat 1019.465 kb on + strandat 1019.497 kb on + strandat 1020.998 kb on + strandat 1020.998 kb on + strandat 1020.999 kb on - strandat 1020.999 kb on - strandat 1020.999 kb on - strandat 1021.006 kb on - strandat 1021.006 kb on - strandat 1021.110 kb on + strand, within ABZR87_RS04860at 1021.110 kb on + strand, within ABZR87_RS04860at 1021.111 kb on - strand, within ABZR87_RS04860at 1021.111 kb on - strand, within ABZR87_RS04860at 1021.111 kb on - strand, within ABZR87_RS04860at 1021.350 kb on + strand, within ABZR87_RS04860at 1021.350 kb on + strand, within ABZR87_RS04860at 1021.350 kb on + strand, within ABZR87_RS04860at 1021.351 kb on - strand, within ABZR87_RS04860at 1021.351 kb on - strand, within ABZR87_RS04860at 1021.351 kb on - strand, within ABZR87_RS04860at 1021.398 kb on + strandat 1021.398 kb on + strandat 1021.398 kb on + strandat 1021.398 kb on + strandat 1021.399 kb on - strandat 1021.399 kb on - strandat 1021.662 kb on + strand, within ABZR87_RS04865at 1021.662 kb on + strand, within ABZR87_RS04865at 1021.662 kb on + strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.663 kb on - strand, within ABZR87_RS04865at 1021.666 kb on + strand, within ABZR87_RS04865at 1021.825 kb on + strand, within ABZR87_RS04865at 1021.826 kb on - strand, within ABZR87_RS04865at 1021.912 kb on + strand, within ABZR87_RS04865at 1021.912 kb on + strand, within ABZR87_RS04865at 1021.912 kb on + strand, within ABZR87_RS04865at 1021.913 kb on - strand, within ABZR87_RS04865at 1021.913 kb on - strand, within ABZR87_RS04865at 1021.933 kb on + strand, within ABZR87_RS04865

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,018,640 + ABZR87_RS04850 0.32 -0.1
1,018,640 + ABZR87_RS04850 0.32 -0.8
1,018,640 + ABZR87_RS04850 0.32 +2.4
1,018,640 + ABZR87_RS04850 0.32 -0.7
1,018,640 + ABZR87_RS04850 0.32 +0.6
1,018,640 + ABZR87_RS04850 0.32 +0.5
1,018,640 + ABZR87_RS04850 0.32 +0.4
1,018,641 - ABZR87_RS04850 0.32 -0.0
1,018,641 - ABZR87_RS04850 0.32 +0.0
1,018,641 - ABZR87_RS04850 0.32 -0.6
1,018,641 - ABZR87_RS04850 0.32 +0.3
1,018,641 - ABZR87_RS04850 0.32 +0.6
1,018,686 - ABZR87_RS04850 0.48 -0.2
1,018,703 + ABZR87_RS04850 0.54 -0.1
1,018,703 + ABZR87_RS04850 0.54 +0.0
1,018,703 + ABZR87_RS04850 0.54 -0.2
1,018,703 + ABZR87_RS04850 0.54 +0.1
1,018,808 + -0.2
1,018,808 + -0.0
1,018,809 - +0.0
1,018,888 + -0.3
1,018,888 + +0.1
1,018,888 + -0.0
1,018,889 - +0.4
1,018,941 + -1.1
1,018,941 + -0.5
1,018,941 + +0.5
1,018,941 + +0.8
1,018,941 + -0.3
1,018,942 - +0.3
1,018,942 - -0.0
1,018,942 - +0.3
1,018,942 - -0.2
1,018,969 + +0.8
1,018,969 + +0.2
1,018,969 + +0.2
1,019,000 + -0.2
1,019,011 + -0.2
1,019,011 + +0.4
1,019,012 - +0.9
1,019,012 - +0.4
1,019,070 - -0.5
1,019,128 + -1.1
1,019,128 + +0.1
1,019,128 + +0.4
1,019,129 - +0.6
1,019,144 + +0.1
1,019,181 + -2.5
1,019,181 + +0.4
1,019,181 + +0.0
1,019,182 - +1.1
1,019,182 - -0.0
1,019,182 - -1.1
1,019,184 - -0.3
1,019,381 + -1.0
1,019,465 + -0.8
1,019,497 + +0.7
1,020,998 + +0.7
1,020,998 + -1.0
1,020,999 - -0.8
1,020,999 - -0.2
1,020,999 - +0.2
1,021,006 - -0.2
1,021,006 - +0.4
1,021,110 + ABZR87_RS04860 0.16 -0.1
1,021,110 + ABZR87_RS04860 0.16 -0.5
1,021,111 - ABZR87_RS04860 0.16 -1.0
1,021,111 - ABZR87_RS04860 0.16 -0.6
1,021,111 - ABZR87_RS04860 0.16 -1.6
1,021,350 + ABZR87_RS04860 0.85 -1.2
1,021,350 + ABZR87_RS04860 0.85 -0.6
1,021,350 + ABZR87_RS04860 0.85 -0.3
1,021,351 - ABZR87_RS04860 0.86 +0.1
1,021,351 - ABZR87_RS04860 0.86 +1.4
1,021,351 - ABZR87_RS04860 0.86 -0.6
1,021,398 + -0.8
1,021,398 + +0.8
1,021,398 + -1.3
1,021,398 + +0.3
1,021,399 - -0.5
1,021,399 - -3.1
1,021,662 + ABZR87_RS04865 0.30 -4.4
1,021,662 + ABZR87_RS04865 0.30 -1.3
1,021,662 + ABZR87_RS04865 0.30 -1.0
1,021,663 - ABZR87_RS04865 0.30 -2.6
1,021,663 - ABZR87_RS04865 0.30 -2.5
1,021,663 - ABZR87_RS04865 0.30 -1.9
1,021,663 - ABZR87_RS04865 0.30 -0.2
1,021,663 - ABZR87_RS04865 0.30 -2.3
1,021,663 - ABZR87_RS04865 0.30 -1.5
1,021,663 - ABZR87_RS04865 0.30 -1.8
1,021,663 - ABZR87_RS04865 0.30 -1.9
1,021,663 - ABZR87_RS04865 0.30 -0.8
1,021,663 - ABZR87_RS04865 0.30 -1.9
1,021,666 + ABZR87_RS04865 0.31 -2.6
1,021,825 + ABZR87_RS04865 0.50 -1.7
1,021,826 - ABZR87_RS04865 0.50 +0.1
1,021,912 + ABZR87_RS04865 0.60 -1.3
1,021,912 + ABZR87_RS04865 0.60 -1.7
1,021,912 + ABZR87_RS04865 0.60 -3.3
1,021,913 - ABZR87_RS04865 0.60 -1.4
1,021,913 - ABZR87_RS04865 0.60 -1.8
1,021,933 + ABZR87_RS04865 0.63 -2.3

Or see this region's nucleotide sequence