Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04180

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04170 and ABZR87_RS04175 are separated by 169 nucleotidesABZR87_RS04175 and ABZR87_RS04180 overlap by 11 nucleotidesABZR87_RS04180 and ABZR87_RS04185 are separated by 22 nucleotidesABZR87_RS04185 and ABZR87_RS04190 are separated by 119 nucleotides ABZR87_RS04170: ABZR87_RS04170 - phosphonate degradation HD-domain oxygenase, at 873,530 to 874,081 _RS04170 ABZR87_RS04175: ABZR87_RS04175 - cupin domain-containing protein, at 874,251 to 874,628 _RS04175 ABZR87_RS04180: ABZR87_RS04180 - TSUP family transporter, at 874,618 to 875,376 _RS04180 ABZR87_RS04185: ABZR87_RS04185 - hypothetical protein, at 875,399 to 875,836 _RS04185 ABZR87_RS04190: ABZR87_RS04190 - hypothetical protein, at 875,956 to 876,207 _RS04190 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1 2at 873.717 kb on - strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.741 kb on + strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.742 kb on - strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.744 kb on + strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.745 kb on - strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.849 kb on + strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 873.850 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.024 kb on - strand, within ABZR87_RS04170at 874.117 kb on - strandat 874.158 kb on + strandat 874.159 kb on - strandat 874.216 kb on + strandat 874.217 kb on - strandat 874.217 kb on - strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.270 kb on + strandat 874.271 kb on - strandat 874.271 kb on - strandat 874.305 kb on + strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.306 kb on - strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.344 kb on + strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.345 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.423 kb on - strand, within ABZR87_RS04175at 874.637 kb on + strandat 874.637 kb on + strandat 874.638 kb on - strandat 874.638 kb on - strandat 874.638 kb on - strandat 874.871 kb on + strand, within ABZR87_RS04180at 874.937 kb on + strand, within ABZR87_RS04180at 874.938 kb on - strand, within ABZR87_RS04180at 875.097 kb on + strand, within ABZR87_RS04180at 875.097 kb on + strand, within ABZR87_RS04180at 875.097 kb on + strand, within ABZR87_RS04180at 875.098 kb on - strand, within ABZR87_RS04180at 875.171 kb on + strand, within ABZR87_RS04180at 875.172 kb on - strand, within ABZR87_RS04180at 875.273 kb on + strand, within ABZR87_RS04180at 875.400 kb on + strandat 875.400 kb on + strandat 875.522 kb on + strand, within ABZR87_RS04185at 875.522 kb on + strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.523 kb on - strand, within ABZR87_RS04185at 875.541 kb on + strand, within ABZR87_RS04185at 875.542 kb on - strand, within ABZR87_RS04185at 875.542 kb on - strand, within ABZR87_RS04185at 875.734 kb on + strand, within ABZR87_RS04185at 875.734 kb on + strand, within ABZR87_RS04185at 875.735 kb on - strand, within ABZR87_RS04185at 875.879 kb on + strandat 876.022 kb on + strand, within ABZR87_RS04190at 876.022 kb on + strand, within ABZR87_RS04190at 876.023 kb on - strand, within ABZR87_RS04190at 876.205 kb on + strandat 876.205 kb on + strandat 876.245 kb on + strandat 876.245 kb on + strandat 876.245 kb on + strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.246 kb on - strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.263 kb on + strandat 876.264 kb on - strandat 876.264 kb on - strandat 876.305 kb on + strandat 876.305 kb on + strandat 876.305 kb on + strandat 876.306 kb on - strandat 876.334 kb on + strandat 876.334 kb on + strandat 876.335 kb on - strandat 876.360 kb on + strandat 876.361 kb on - strandat 876.361 kb on - strandat 876.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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873,717 - ABZR87_RS04170 0.34 -0.5
873,741 + ABZR87_RS04170 0.38 -0.3
873,741 + ABZR87_RS04170 0.38 +0.5
873,741 + ABZR87_RS04170 0.38 +0.2
873,742 - ABZR87_RS04170 0.38 +0.3
873,742 - ABZR87_RS04170 0.38 +0.1
873,744 + ABZR87_RS04170 0.39 +1.1
873,744 + ABZR87_RS04170 0.39 -0.5
873,745 - ABZR87_RS04170 0.39 -0.2
873,745 - ABZR87_RS04170 0.39 +0.1
873,849 + ABZR87_RS04170 0.58 -0.3
873,849 + ABZR87_RS04170 0.58 +0.0
873,849 + ABZR87_RS04170 0.58 +0.1
873,849 + ABZR87_RS04170 0.58 -0.6
873,850 - ABZR87_RS04170 0.58 +0.5
873,850 - ABZR87_RS04170 0.58 +0.8
873,850 - ABZR87_RS04170 0.58 -1.7
874,024 - ABZR87_RS04170 0.89 +0.6
874,024 - ABZR87_RS04170 0.89 +0.3
874,117 - -0.2
874,158 + +0.1
874,159 - -0.5
874,216 + -0.5
874,217 - +1.9
874,217 - -0.3
874,270 + -0.1
874,270 + +0.0
874,270 + +0.3
874,270 + +0.2
874,271 - -1.0
874,271 - -0.2
874,305 + ABZR87_RS04175 0.14 -1.1
874,306 - ABZR87_RS04175 0.15 +0.1
874,306 - ABZR87_RS04175 0.15 -0.2
874,306 - ABZR87_RS04175 0.15 +0.7
874,306 - ABZR87_RS04175 0.15 +0.1
874,306 - ABZR87_RS04175 0.15 +2.0
874,344 + ABZR87_RS04175 0.25 -0.4
874,344 + ABZR87_RS04175 0.25 +0.1
874,344 + ABZR87_RS04175 0.25 +0.5
874,344 + ABZR87_RS04175 0.25 +0.1
874,344 + ABZR87_RS04175 0.25 +0.3
874,344 + ABZR87_RS04175 0.25 -1.0
874,344 + ABZR87_RS04175 0.25 +0.6
874,344 + ABZR87_RS04175 0.25 +0.6
874,344 + ABZR87_RS04175 0.25 +0.2
874,345 - ABZR87_RS04175 0.25 -0.5
874,345 - ABZR87_RS04175 0.25 -1.2
874,345 - ABZR87_RS04175 0.25 +1.3
874,345 - ABZR87_RS04175 0.25 +0.1
874,345 - ABZR87_RS04175 0.25 -0.1
874,345 - ABZR87_RS04175 0.25 +0.9
874,345 - ABZR87_RS04175 0.25 +0.4
874,423 - ABZR87_RS04175 0.46 +0.8
874,423 - ABZR87_RS04175 0.46 +0.8
874,637 + -0.4
874,637 + -0.3
874,638 - -0.1
874,638 - -0.1
874,638 - +0.3
874,871 + ABZR87_RS04180 0.33 +0.5
874,937 + ABZR87_RS04180 0.42 +0.7
874,938 - ABZR87_RS04180 0.42 +0.6
875,097 + ABZR87_RS04180 0.63 +0.5
875,097 + ABZR87_RS04180 0.63 -0.2
875,097 + ABZR87_RS04180 0.63 +0.8
875,098 - ABZR87_RS04180 0.63 +0.6
875,171 + ABZR87_RS04180 0.73 +0.2
875,172 - ABZR87_RS04180 0.73 +0.4
875,273 + ABZR87_RS04180 0.86 -0.3
875,400 + -0.4
875,400 + -0.1
875,522 + ABZR87_RS04185 0.28 -0.9
875,522 + ABZR87_RS04185 0.28 -1.5
875,523 - ABZR87_RS04185 0.28 -0.2
875,523 - ABZR87_RS04185 0.28 -0.4
875,523 - ABZR87_RS04185 0.28 +0.0
875,523 - ABZR87_RS04185 0.28 -0.5
875,541 + ABZR87_RS04185 0.32 -0.1
875,542 - ABZR87_RS04185 0.33 -1.0
875,542 - ABZR87_RS04185 0.33 -0.2
875,734 + ABZR87_RS04185 0.76 -0.2
875,734 + ABZR87_RS04185 0.76 -0.3
875,735 - ABZR87_RS04185 0.77 +0.6
875,879 + +0.5
876,022 + ABZR87_RS04190 0.26 +0.1
876,022 + ABZR87_RS04190 0.26 +0.9
876,023 - ABZR87_RS04190 0.27 +1.9
876,205 + +0.1
876,205 + +0.2
876,245 + +0.9
876,245 + +0.4
876,245 + -0.3
876,246 - -0.2
876,246 - -0.2
876,246 - -1.1
876,246 - +0.2
876,246 - -0.6
876,246 - -1.1
876,263 + -1.5
876,263 + -1.8
876,263 + +0.1
876,263 + -1.3
876,263 + -0.4
876,264 - -0.8
876,264 - -0.2
876,305 + -1.2
876,305 + -1.1
876,305 + -1.8
876,306 - -0.0
876,334 + -1.2
876,334 + -1.8
876,335 - -0.9
876,360 + +0.4
876,361 - -1.0
876,361 - -0.8
876,361 - -0.3

Or see this region's nucleotide sequence