Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03235

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03225 and ABZR87_RS03230 are separated by 91 nucleotidesABZR87_RS03230 and ABZR87_RS03235 are separated by 86 nucleotidesABZR87_RS03235 and ABZR87_RS03240 overlap by 4 nucleotides ABZR87_RS03225: ABZR87_RS03225 - metal-dependent hydrolase, at 680,652 to 681,548 _RS03225 ABZR87_RS03230: ABZR87_RS03230 - MerR family transcriptional regulator, at 681,640 to 682,458 _RS03230 ABZR87_RS03235: ABZR87_RS03235 - hypothetical protein, at 682,545 to 683,702 _RS03235 ABZR87_RS03240: ABZR87_RS03240 - hypothetical protein, at 683,699 to 684,772 _RS03240 Position (kb) 682 683 684Strain fitness (log2 ratio) -2 -1 0 1 2at 681.598 kb on - strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.601 kb on + strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.602 kb on - strandat 681.605 kb on + strandat 681.606 kb on - strandat 681.606 kb on - strandat 681.606 kb on - strandat 681.642 kb on - strandat 681.642 kb on - strandat 681.719 kb on + strandat 681.720 kb on - strandat 681.848 kb on + strand, within ABZR87_RS03230at 681.848 kb on + strand, within ABZR87_RS03230at 681.848 kb on + strand, within ABZR87_RS03230at 681.849 kb on - strand, within ABZR87_RS03230at 681.849 kb on - strand, within ABZR87_RS03230at 681.849 kb on - strand, within ABZR87_RS03230at 681.903 kb on + strand, within ABZR87_RS03230at 681.903 kb on + strand, within ABZR87_RS03230at 681.904 kb on - strand, within ABZR87_RS03230at 682.007 kb on + strand, within ABZR87_RS03230at 682.007 kb on + strand, within ABZR87_RS03230at 682.007 kb on + strand, within ABZR87_RS03230at 682.109 kb on + strand, within ABZR87_RS03230at 682.110 kb on - strand, within ABZR87_RS03230at 682.110 kb on - strand, within ABZR87_RS03230at 682.110 kb on - strand, within ABZR87_RS03230at 682.229 kb on + strand, within ABZR87_RS03230at 682.230 kb on - strand, within ABZR87_RS03230at 682.230 kb on - strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.286 kb on + strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.287 kb on - strand, within ABZR87_RS03230at 682.340 kb on + strand, within ABZR87_RS03230at 682.341 kb on - strand, within ABZR87_RS03230at 682.471 kb on - strandat 682.575 kb on - strandat 682.791 kb on + strand, within ABZR87_RS03235at 682.792 kb on - strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.421 kb on + strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.422 kb on - strand, within ABZR87_RS03235at 683.529 kb on + strand, within ABZR87_RS03235at 683.529 kb on + strand, within ABZR87_RS03235at 683.529 kb on + strand, within ABZR87_RS03235at 683.529 kb on + strand, within ABZR87_RS03235at 683.529 kb on + strand, within ABZR87_RS03235at 683.530 kb on - strand, within ABZR87_RS03235at 683.530 kb on - strand, within ABZR87_RS03235at 683.530 kb on - strand, within ABZR87_RS03235at 683.536 kb on - strand, within ABZR87_RS03235at 684.134 kb on + strand, within ABZR87_RS03240at 684.134 kb on + strand, within ABZR87_RS03240at 684.134 kb on + strand, within ABZR87_RS03240at 684.146 kb on + strand, within ABZR87_RS03240at 684.293 kb on + strand, within ABZR87_RS03240at 684.294 kb on - strand, within ABZR87_RS03240at 684.302 kb on + strand, within ABZR87_RS03240at 684.302 kb on + strand, within ABZR87_RS03240at 684.302 kb on + strand, within ABZR87_RS03240at 684.302 kb on + strand, within ABZR87_RS03240at 684.303 kb on - strand, within ABZR87_RS03240at 684.303 kb on - strand, within ABZR87_RS03240at 684.303 kb on - strand, within ABZR87_RS03240at 684.303 kb on - strand, within ABZR87_RS03240at 684.440 kb on + strand, within ABZR87_RS03240at 684.441 kb on - strand, within ABZR87_RS03240at 684.441 kb on - strand, within ABZR87_RS03240at 684.441 kb on - strand, within ABZR87_RS03240at 684.441 kb on - strand, within ABZR87_RS03240at 684.441 kb on - strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.602 kb on + strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.603 kb on - strand, within ABZR87_RS03240at 684.643 kb on + strand, within ABZR87_RS03240at 684.643 kb on + strand, within ABZR87_RS03240at 684.644 kb on - strand, within ABZR87_RS03240at 684.644 kb on - strand, within ABZR87_RS03240at 684.644 kb on - strand, within ABZR87_RS03240at 684.677 kb on + strandat 684.677 kb on + strandat 684.677 kb on + strandat 684.678 kb on - strandat 684.678 kb on - strandat 684.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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681,598 - -2.1
681,601 + +0.0
681,601 + -0.7
681,601 + -0.0
681,601 + +0.6
681,601 + -0.5
681,602 - -1.6
681,602 - -0.1
681,602 - +0.1
681,602 - -0.3
681,602 - +1.2
681,602 - +0.6
681,602 - +1.2
681,602 - +0.9
681,605 + -0.7
681,606 - +0.4
681,606 - -1.0
681,606 - +0.2
681,642 - +0.7
681,642 - +0.1
681,719 + -0.1
681,720 - -1.8
681,848 + ABZR87_RS03230 0.25 +0.2
681,848 + ABZR87_RS03230 0.25 +0.3
681,848 + ABZR87_RS03230 0.25 +0.6
681,849 - ABZR87_RS03230 0.26 +0.2
681,849 - ABZR87_RS03230 0.26 -0.6
681,849 - ABZR87_RS03230 0.26 +0.3
681,903 + ABZR87_RS03230 0.32 +0.2
681,903 + ABZR87_RS03230 0.32 -0.2
681,904 - ABZR87_RS03230 0.32 -0.0
682,007 + ABZR87_RS03230 0.45 +2.1
682,007 + ABZR87_RS03230 0.45 +0.7
682,007 + ABZR87_RS03230 0.45 -0.2
682,109 + ABZR87_RS03230 0.57 +0.1
682,110 - ABZR87_RS03230 0.57 -0.2
682,110 - ABZR87_RS03230 0.57 -0.1
682,110 - ABZR87_RS03230 0.57 -0.1
682,229 + ABZR87_RS03230 0.72 -0.5
682,230 - ABZR87_RS03230 0.72 -0.9
682,230 - ABZR87_RS03230 0.72 -0.6
682,286 + ABZR87_RS03230 0.79 +1.3
682,286 + ABZR87_RS03230 0.79 -0.7
682,286 + ABZR87_RS03230 0.79 +0.2
682,286 + ABZR87_RS03230 0.79 -0.8
682,286 + ABZR87_RS03230 0.79 -0.8
682,286 + ABZR87_RS03230 0.79 +0.4
682,286 + ABZR87_RS03230 0.79 -0.4
682,287 - ABZR87_RS03230 0.79 +0.4
682,287 - ABZR87_RS03230 0.79 +0.6
682,287 - ABZR87_RS03230 0.79 +0.5
682,287 - ABZR87_RS03230 0.79 +0.4
682,287 - ABZR87_RS03230 0.79 -0.2
682,287 - ABZR87_RS03230 0.79 -0.2
682,340 + ABZR87_RS03230 0.85 -0.2
682,341 - ABZR87_RS03230 0.86 +1.1
682,471 - +0.4
682,575 - +0.7
682,791 + ABZR87_RS03235 0.21 +0.7
682,792 - ABZR87_RS03235 0.21 +0.5
683,421 + ABZR87_RS03235 0.76 +0.2
683,421 + ABZR87_RS03235 0.76 -0.6
683,421 + ABZR87_RS03235 0.76 +0.8
683,421 + ABZR87_RS03235 0.76 +1.2
683,422 - ABZR87_RS03235 0.76 +0.4
683,422 - ABZR87_RS03235 0.76 +0.2
683,422 - ABZR87_RS03235 0.76 -0.2
683,422 - ABZR87_RS03235 0.76 -0.6
683,422 - ABZR87_RS03235 0.76 -0.4
683,422 - ABZR87_RS03235 0.76 +1.1
683,529 + ABZR87_RS03235 0.85 +0.8
683,529 + ABZR87_RS03235 0.85 +0.0
683,529 + ABZR87_RS03235 0.85 +0.6
683,529 + ABZR87_RS03235 0.85 -1.0
683,529 + ABZR87_RS03235 0.85 +1.2
683,530 - ABZR87_RS03235 0.85 +1.0
683,530 - ABZR87_RS03235 0.85 +0.5
683,530 - ABZR87_RS03235 0.85 +0.8
683,536 - ABZR87_RS03235 0.86 +0.9
684,134 + ABZR87_RS03240 0.41 +1.5
684,134 + ABZR87_RS03240 0.41 +0.6
684,134 + ABZR87_RS03240 0.41 -0.1
684,146 + ABZR87_RS03240 0.42 -0.6
684,293 + ABZR87_RS03240 0.55 +0.2
684,294 - ABZR87_RS03240 0.55 +0.3
684,302 + ABZR87_RS03240 0.56 +1.3
684,302 + ABZR87_RS03240 0.56 +1.1
684,302 + ABZR87_RS03240 0.56 +0.4
684,302 + ABZR87_RS03240 0.56 +0.1
684,303 - ABZR87_RS03240 0.56 +0.1
684,303 - ABZR87_RS03240 0.56 +0.9
684,303 - ABZR87_RS03240 0.56 +0.9
684,303 - ABZR87_RS03240 0.56 +0.8
684,440 + ABZR87_RS03240 0.69 +0.2
684,441 - ABZR87_RS03240 0.69 -0.2
684,441 - ABZR87_RS03240 0.69 -0.9
684,441 - ABZR87_RS03240 0.69 -0.3
684,441 - ABZR87_RS03240 0.69 -0.9
684,441 - ABZR87_RS03240 0.69 -0.3
684,602 + ABZR87_RS03240 0.84 +0.8
684,602 + ABZR87_RS03240 0.84 +0.4
684,602 + ABZR87_RS03240 0.84 -0.4
684,602 + ABZR87_RS03240 0.84 -0.8
684,602 + ABZR87_RS03240 0.84 +0.3
684,602 + ABZR87_RS03240 0.84 +0.0
684,602 + ABZR87_RS03240 0.84 +0.5
684,602 + ABZR87_RS03240 0.84 +0.1
684,602 + ABZR87_RS03240 0.84 +1.0
684,603 - ABZR87_RS03240 0.84 -0.5
684,603 - ABZR87_RS03240 0.84 -2.5
684,603 - ABZR87_RS03240 0.84 +0.5
684,603 - ABZR87_RS03240 0.84 -0.2
684,603 - ABZR87_RS03240 0.84 +0.3
684,603 - ABZR87_RS03240 0.84 -0.1
684,603 - ABZR87_RS03240 0.84 +0.8
684,603 - ABZR87_RS03240 0.84 -0.8
684,603 - ABZR87_RS03240 0.84 -0.0
684,603 - ABZR87_RS03240 0.84 +0.7
684,603 - ABZR87_RS03240 0.84 -0.9
684,643 + ABZR87_RS03240 0.88 -0.0
684,643 + ABZR87_RS03240 0.88 -0.4
684,644 - ABZR87_RS03240 0.88 -0.6
684,644 - ABZR87_RS03240 0.88 -0.2
684,644 - ABZR87_RS03240 0.88 +0.4
684,677 + +0.1
684,677 + -0.1
684,677 + +0.7
684,678 - +0.0
684,678 - +0.3
684,683 + -0.4

Or see this region's nucleotide sequence