Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4082 and Shewana3_4083 are separated by 81 nucleotides Shewana3_4083 and Shewana3_4084 are separated by 24 nucleotides Shewana3_4084 and Shewana3_4085 are separated by 61 nucleotides
Shewana3_4082: Shewana3_4082 - molybdenum cofactor biosynthesis protein A (RefSeq), at 4,905,075 to 4,906,058
_4082
Shewana3_4083: Shewana3_4083 - hypothetical protein (RefSeq), at 4,906,140 to 4,906,595
_4083
Shewana3_4084: Shewana3_4084 - formamidopyrimidine-DNA glycosylase (RefSeq), at 4,906,620 to 4,907,435
_4084
Shewana3_4085: Shewana3_4085 - glycosyl transferase family protein (RefSeq), at 4,907,497 to 4,909,221
_4085
Position (kb)
4906
4907 Strain fitness (log2 ratio)
-1
0
1 at 4905.378 kb on - strand, within Shewana3_4082 at 4905.536 kb on - strand, within Shewana3_4082 at 4905.676 kb on - strand, within Shewana3_4082 at 4905.694 kb on + strand, within Shewana3_4082 at 4905.778 kb on - strand, within Shewana3_4082 at 4905.778 kb on - strand, within Shewana3_4082 at 4905.778 kb on - strand, within Shewana3_4082 at 4905.852 kb on - strand, within Shewana3_4082 at 4905.953 kb on + strand, within Shewana3_4082 at 4905.953 kb on + strand, within Shewana3_4082 at 4905.961 kb on - strand at 4905.961 kb on - strand at 4905.988 kb on + strand at 4905.996 kb on - strand at 4905.996 kb on - strand at 4905.996 kb on - strand at 4905.996 kb on - strand at 4906.150 kb on + strand at 4906.275 kb on - strand, within Shewana3_4083 at 4906.308 kb on - strand, within Shewana3_4083 at 4906.355 kb on - strand, within Shewana3_4083 at 4906.375 kb on - strand, within Shewana3_4083 at 4906.384 kb on + strand, within Shewana3_4083 at 4906.391 kb on - strand, within Shewana3_4083 at 4906.392 kb on - strand, within Shewana3_4083 at 4906.392 kb on - strand, within Shewana3_4083 at 4906.392 kb on - strand, within Shewana3_4083 at 4906.513 kb on - strand, within Shewana3_4083 at 4906.686 kb on + strand at 4906.703 kb on + strand, within Shewana3_4084 at 4906.726 kb on - strand, within Shewana3_4084 at 4906.726 kb on - strand, within Shewana3_4084 at 4906.728 kb on + strand, within Shewana3_4084 at 4906.817 kb on + strand, within Shewana3_4084 at 4906.878 kb on + strand, within Shewana3_4084 at 4906.900 kb on + strand, within Shewana3_4084 at 4907.040 kb on - strand, within Shewana3_4084 at 4907.148 kb on - strand, within Shewana3_4084 at 4907.168 kb on - strand, within Shewana3_4084 at 4907.256 kb on - strand, within Shewana3_4084 at 4907.348 kb on + strand, within Shewana3_4084 at 4907.358 kb on - strand at 4907.567 kb on + strand at 4907.582 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,905,378 - Shewana3_4082 0.31 +0.3 4,905,536 - Shewana3_4082 0.47 +0.2 4,905,676 - Shewana3_4082 0.61 +0.4 4,905,694 + Shewana3_4082 0.63 +0.2 4,905,778 - Shewana3_4082 0.71 +0.2 4,905,778 - Shewana3_4082 0.71 +0.2 4,905,778 - Shewana3_4082 0.71 +0.2 4,905,852 - Shewana3_4082 0.79 +0.3 4,905,953 + Shewana3_4082 0.89 +0.7 4,905,953 + Shewana3_4082 0.89 -1.7 4,905,961 - -0.1 4,905,961 - -0.3 4,905,988 + -1.6 4,905,996 - -0.4 4,905,996 - +0.1 4,905,996 - -0.3 4,905,996 - -0.5 4,906,150 + +0.5 4,906,275 - Shewana3_4083 0.30 -0.0 4,906,308 - Shewana3_4083 0.37 +0.4 4,906,355 - Shewana3_4083 0.47 +0.2 4,906,375 - Shewana3_4083 0.52 +0.5 4,906,384 + Shewana3_4083 0.54 +0.6 4,906,391 - Shewana3_4083 0.55 -1.1 4,906,392 - Shewana3_4083 0.55 +0.6 4,906,392 - Shewana3_4083 0.55 +0.2 4,906,392 - Shewana3_4083 0.55 +0.9 4,906,513 - Shewana3_4083 0.82 +0.4 4,906,686 + +0.7 4,906,703 + Shewana3_4084 0.10 +0.5 4,906,726 - Shewana3_4084 0.13 +0.7 4,906,726 - Shewana3_4084 0.13 -0.6 4,906,728 + Shewana3_4084 0.13 -0.1 4,906,817 + Shewana3_4084 0.24 +0.6 4,906,878 + Shewana3_4084 0.32 +0.0 4,906,900 + Shewana3_4084 0.34 +0.4 4,907,040 - Shewana3_4084 0.51 -0.2 4,907,148 - Shewana3_4084 0.65 -0.3 4,907,168 - Shewana3_4084 0.67 +0.3 4,907,256 - Shewana3_4084 0.78 +0.5 4,907,348 + Shewana3_4084 0.89 +0.6 4,907,358 - -0.6 4,907,567 + +0.9 4,907,582 - +1.2
Or see this region's nucleotide sequence