Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4066 and Shewana3_4067 overlap by 4 nucleotides Shewana3_4067 and Shewana3_4068 are separated by 42 nucleotides Shewana3_4068 and Shewana3_4069 are separated by 101 nucleotides
Shewana3_4066: Shewana3_4066 - CzcA family heavy metal efflux protein (RefSeq), at 4,885,090 to 4,888,143
_4066
Shewana3_4067: Shewana3_4067 - hypothetical protein (RefSeq), at 4,888,140 to 4,888,445
_4067
Shewana3_4068: Shewana3_4068 - hypothetical protein (RefSeq), at 4,888,488 to 4,889,123
_4068
Shewana3_4069: Shewana3_4069 - metal dependent phosphohydrolase (RefSeq), at 4,889,225 to 4,890,415
_4069
Position (kb)
4888
4889 Strain fitness (log2 ratio)
-1
0
1
2 at 4887.166 kb on + strand, within Shewana3_4066 at 4887.166 kb on + strand, within Shewana3_4066 at 4887.251 kb on + strand, within Shewana3_4066 at 4887.251 kb on + strand, within Shewana3_4066 at 4887.252 kb on - strand, within Shewana3_4066 at 4887.259 kb on - strand, within Shewana3_4066 at 4887.383 kb on - strand, within Shewana3_4066 at 4887.437 kb on + strand, within Shewana3_4066 at 4887.469 kb on - strand, within Shewana3_4066 at 4887.469 kb on - strand, within Shewana3_4066 at 4887.481 kb on - strand, within Shewana3_4066 at 4887.481 kb on - strand, within Shewana3_4066 at 4887.488 kb on + strand, within Shewana3_4066 at 4887.705 kb on - strand, within Shewana3_4066 at 4887.824 kb on + strand, within Shewana3_4066 at 4887.861 kb on + strand at 4888.231 kb on + strand, within Shewana3_4067 at 4888.231 kb on + strand, within Shewana3_4067 at 4888.231 kb on + strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.239 kb on - strand, within Shewana3_4067 at 4888.261 kb on + strand, within Shewana3_4067 at 4888.296 kb on + strand, within Shewana3_4067 at 4888.303 kb on - strand, within Shewana3_4067 at 4888.347 kb on - strand, within Shewana3_4067 at 4888.369 kb on - strand, within Shewana3_4067 at 4888.394 kb on + strand, within Shewana3_4067 at 4888.591 kb on - strand, within Shewana3_4068 at 4888.766 kb on - strand, within Shewana3_4068 at 4888.961 kb on + strand, within Shewana3_4068 at 4889.076 kb on - strand at 4889.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,887,166 + Shewana3_4066 0.68 -0.1 4,887,166 + Shewana3_4066 0.68 -0.0 4,887,251 + Shewana3_4066 0.71 +0.1 4,887,251 + Shewana3_4066 0.71 -0.1 4,887,252 - Shewana3_4066 0.71 -0.1 4,887,259 - Shewana3_4066 0.71 -0.9 4,887,383 - Shewana3_4066 0.75 -0.4 4,887,437 + Shewana3_4066 0.77 -0.3 4,887,469 - Shewana3_4066 0.78 -0.3 4,887,469 - Shewana3_4066 0.78 +0.1 4,887,481 - Shewana3_4066 0.78 -0.9 4,887,481 - Shewana3_4066 0.78 +0.2 4,887,488 + Shewana3_4066 0.79 +0.4 4,887,705 - Shewana3_4066 0.86 +0.3 4,887,824 + Shewana3_4066 0.90 +0.2 4,887,861 + -0.6 4,888,231 + Shewana3_4067 0.30 +1.0 4,888,231 + Shewana3_4067 0.30 -0.0 4,888,231 + Shewana3_4067 0.30 +0.0 4,888,239 - Shewana3_4067 0.32 -0.5 4,888,239 - Shewana3_4067 0.32 +0.2 4,888,239 - Shewana3_4067 0.32 -0.7 4,888,261 + Shewana3_4067 0.40 -0.5 4,888,296 + Shewana3_4067 0.51 +0.8 4,888,303 - Shewana3_4067 0.53 +0.0 4,888,347 - Shewana3_4067 0.68 -0.9 4,888,369 - Shewana3_4067 0.75 +0.3 4,888,394 + Shewana3_4067 0.83 +0.3 4,888,591 - Shewana3_4068 0.16 +0.1 4,888,766 - Shewana3_4068 0.44 +0.3 4,888,961 + Shewana3_4068 0.74 -0.4 4,889,076 - -0.3 4,889,236 - +2.1
Or see this region's nucleotide sequence