Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4024 and Shewana3_4025 are separated by 1 nucleotides Shewana3_4025 and Shewana3_4026 overlap by 8 nucleotides Shewana3_4026 and Shewana3_4027 are separated by 149 nucleotides
Shewana3_4024: Shewana3_4024 - peptidase (RefSeq), at 4,834,657 to 4,834,959
_4024
Shewana3_4025: Shewana3_4025 - two component transcriptional regulator (RefSeq), at 4,834,961 to 4,835,644
_4025
Shewana3_4026: Shewana3_4026 - ATPase domain-containing protein (RefSeq), at 4,835,637 to 4,837,001
_4026
Shewana3_4027: Shewana3_4027 - hypothetical protein (RefSeq), at 4,837,151 to 4,838,656
_4027
Position (kb)
4835
4836
4837
4838 Strain fitness (log2 ratio)
-2
-1
0
1 at 4834.685 kb on - strand at 4834.784 kb on + strand, within Shewana3_4024 at 4834.802 kb on - strand, within Shewana3_4024 at 4834.807 kb on - strand, within Shewana3_4024 at 4834.827 kb on + strand, within Shewana3_4024 at 4834.853 kb on + strand, within Shewana3_4024 at 4834.966 kb on + strand at 4835.027 kb on + strand at 4835.027 kb on + strand at 4835.027 kb on + strand at 4835.032 kb on + strand, within Shewana3_4025 at 4835.032 kb on + strand, within Shewana3_4025 at 4835.037 kb on + strand, within Shewana3_4025 at 4835.144 kb on - strand, within Shewana3_4025 at 4835.183 kb on + strand, within Shewana3_4025 at 4835.258 kb on + strand, within Shewana3_4025 at 4835.259 kb on - strand, within Shewana3_4025 at 4835.300 kb on + strand, within Shewana3_4025 at 4835.301 kb on - strand, within Shewana3_4025 at 4835.373 kb on + strand, within Shewana3_4025 at 4835.373 kb on + strand, within Shewana3_4025 at 4835.373 kb on + strand, within Shewana3_4025 at 4835.381 kb on - strand, within Shewana3_4025 at 4835.381 kb on - strand, within Shewana3_4025 at 4835.631 kb on + strand at 4835.631 kb on + strand at 4835.740 kb on - strand at 4836.030 kb on - strand, within Shewana3_4026 at 4836.272 kb on - strand, within Shewana3_4026 at 4836.280 kb on + strand, within Shewana3_4026 at 4836.283 kb on - strand, within Shewana3_4026 at 4836.298 kb on - strand, within Shewana3_4026 at 4836.305 kb on + strand, within Shewana3_4026 at 4836.313 kb on + strand, within Shewana3_4026 at 4836.370 kb on - strand, within Shewana3_4026 at 4836.425 kb on + strand, within Shewana3_4026 at 4836.521 kb on + strand, within Shewana3_4026 at 4836.522 kb on - strand, within Shewana3_4026 at 4836.529 kb on - strand, within Shewana3_4026 at 4836.573 kb on - strand, within Shewana3_4026 at 4836.575 kb on + strand, within Shewana3_4026 at 4836.793 kb on - strand, within Shewana3_4026 at 4836.805 kb on + strand, within Shewana3_4026 at 4837.105 kb on + strand at 4837.215 kb on - strand at 4837.256 kb on - strand at 4837.286 kb on + strand at 4837.346 kb on + strand, within Shewana3_4027 at 4837.354 kb on - strand, within Shewana3_4027 at 4837.381 kb on + strand, within Shewana3_4027 at 4837.572 kb on + strand, within Shewana3_4027 at 4837.580 kb on - strand, within Shewana3_4027 at 4837.668 kb on + strand, within Shewana3_4027 at 4837.693 kb on - strand, within Shewana3_4027 at 4837.701 kb on + strand, within Shewana3_4027 at 4837.701 kb on + strand, within Shewana3_4027 at 4837.740 kb on - strand, within Shewana3_4027 at 4837.915 kb on + strand, within Shewana3_4027 at 4837.969 kb on + strand, within Shewana3_4027
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,834,685 - -0.3 4,834,784 + Shewana3_4024 0.42 -0.1 4,834,802 - Shewana3_4024 0.48 -0.8 4,834,807 - Shewana3_4024 0.50 +0.1 4,834,827 + Shewana3_4024 0.56 +0.1 4,834,853 + Shewana3_4024 0.65 -0.3 4,834,966 + +0.0 4,835,027 + +0.2 4,835,027 + -0.4 4,835,027 + -0.2 4,835,032 + Shewana3_4025 0.10 +0.9 4,835,032 + Shewana3_4025 0.10 +0.1 4,835,037 + Shewana3_4025 0.11 +0.5 4,835,144 - Shewana3_4025 0.27 +0.2 4,835,183 + Shewana3_4025 0.32 -0.4 4,835,258 + Shewana3_4025 0.43 -1.0 4,835,259 - Shewana3_4025 0.44 -0.9 4,835,300 + Shewana3_4025 0.50 -0.5 4,835,301 - Shewana3_4025 0.50 +0.1 4,835,373 + Shewana3_4025 0.60 -0.1 4,835,373 + Shewana3_4025 0.60 -0.4 4,835,373 + Shewana3_4025 0.60 -0.3 4,835,381 - Shewana3_4025 0.61 +0.6 4,835,381 - Shewana3_4025 0.61 +0.6 4,835,631 + +0.0 4,835,631 + -0.4 4,835,740 - -2.0 4,836,030 - Shewana3_4026 0.29 -0.1 4,836,272 - Shewana3_4026 0.47 +0.5 4,836,280 + Shewana3_4026 0.47 -0.3 4,836,283 - Shewana3_4026 0.47 +0.1 4,836,298 - Shewana3_4026 0.48 -0.5 4,836,305 + Shewana3_4026 0.49 -1.4 4,836,313 + Shewana3_4026 0.50 -0.2 4,836,370 - Shewana3_4026 0.54 -0.8 4,836,425 + Shewana3_4026 0.58 -0.2 4,836,521 + Shewana3_4026 0.65 -0.7 4,836,522 - Shewana3_4026 0.65 -0.4 4,836,529 - Shewana3_4026 0.65 -0.0 4,836,573 - Shewana3_4026 0.69 -0.3 4,836,575 + Shewana3_4026 0.69 +0.2 4,836,793 - Shewana3_4026 0.85 -1.6 4,836,805 + Shewana3_4026 0.86 -0.6 4,837,105 + -0.8 4,837,215 - +0.1 4,837,256 - -0.1 4,837,286 + -0.3 4,837,346 + Shewana3_4027 0.13 +0.4 4,837,354 - Shewana3_4027 0.13 +0.5 4,837,381 + Shewana3_4027 0.15 +0.1 4,837,572 + Shewana3_4027 0.28 -0.2 4,837,580 - Shewana3_4027 0.28 +0.6 4,837,668 + Shewana3_4027 0.34 -0.9 4,837,693 - Shewana3_4027 0.36 +0.3 4,837,701 + Shewana3_4027 0.37 +0.4 4,837,701 + Shewana3_4027 0.37 -0.1 4,837,740 - Shewana3_4027 0.39 -0.5 4,837,915 + Shewana3_4027 0.51 +1.3 4,837,969 + Shewana3_4027 0.54 +0.4
Or see this region's nucleotide sequence