Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3835 and Shewana3_3836 are separated by 179 nucleotides Shewana3_3836 and Shewana3_3837 overlap by 4 nucleotides Shewana3_3837 and Shewana3_3838 are separated by 462 nucleotides
Shewana3_3835: Shewana3_3835 - Na+/H+ antiporter NhaC (RefSeq), at 4,606,761 to 4,608,266
_3835
Shewana3_3836: Shewana3_3836 - hypothetical protein (RefSeq), at 4,608,446 to 4,608,667
_3836
Shewana3_3837: Shewana3_3837 - hypothetical protein (RefSeq), at 4,608,664 to 4,608,876
_3837
Shewana3_3838: Shewana3_3838 - DSBA oxidoreductase (RefSeq), at 4,609,339 to 4,609,950
_3838
Position (kb)
4608
4609 Strain fitness (log2 ratio)
-2
-1
0
1 at 4607.494 kb on - strand, within Shewana3_3835 at 4607.782 kb on + strand, within Shewana3_3835 at 4607.798 kb on + strand, within Shewana3_3835 at 4607.806 kb on - strand, within Shewana3_3835 at 4607.806 kb on - strand, within Shewana3_3835 at 4607.839 kb on + strand, within Shewana3_3835 at 4607.847 kb on - strand, within Shewana3_3835 at 4607.847 kb on - strand, within Shewana3_3835 at 4607.847 kb on - strand, within Shewana3_3835 at 4607.847 kb on - strand, within Shewana3_3835 at 4607.938 kb on - strand, within Shewana3_3835 at 4608.012 kb on + strand, within Shewana3_3835 at 4608.012 kb on + strand, within Shewana3_3835 at 4608.127 kb on - strand at 4608.136 kb on + strand at 4608.213 kb on + strand at 4608.227 kb on - strand at 4608.430 kb on + strand at 4608.430 kb on + strand at 4608.438 kb on - strand at 4608.438 kb on - strand at 4608.438 kb on - strand at 4608.438 kb on - strand at 4608.448 kb on - strand at 4608.501 kb on + strand, within Shewana3_3836 at 4608.711 kb on + strand, within Shewana3_3837 at 4608.724 kb on - strand, within Shewana3_3837 at 4608.724 kb on - strand, within Shewana3_3837 at 4608.795 kb on - strand, within Shewana3_3837 at 4609.111 kb on - strand at 4609.284 kb on + strand at 4609.453 kb on - strand, within Shewana3_3838 at 4609.537 kb on - strand, within Shewana3_3838
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,607,494 - Shewana3_3835 0.49 -0.3 4,607,782 + Shewana3_3835 0.68 -0.8 4,607,798 + Shewana3_3835 0.69 -0.3 4,607,806 - Shewana3_3835 0.69 +0.0 4,607,806 - Shewana3_3835 0.69 +0.8 4,607,839 + Shewana3_3835 0.72 -0.1 4,607,847 - Shewana3_3835 0.72 +0.5 4,607,847 - Shewana3_3835 0.72 +0.1 4,607,847 - Shewana3_3835 0.72 +0.1 4,607,847 - Shewana3_3835 0.72 -0.1 4,607,938 - Shewana3_3835 0.78 -0.9 4,608,012 + Shewana3_3835 0.83 -0.5 4,608,012 + Shewana3_3835 0.83 -0.0 4,608,127 - -0.0 4,608,136 + -0.5 4,608,213 + +0.2 4,608,227 - +0.3 4,608,430 + +1.2 4,608,430 + +0.2 4,608,438 - -1.6 4,608,438 - +0.6 4,608,438 - +0.3 4,608,438 - -1.1 4,608,448 - +0.2 4,608,501 + Shewana3_3836 0.25 +1.0 4,608,711 + Shewana3_3837 0.22 +0.2 4,608,724 - Shewana3_3837 0.28 -1.8 4,608,724 - Shewana3_3837 0.28 -0.1 4,608,795 - Shewana3_3837 0.62 -0.2 4,609,111 - -0.6 4,609,284 + -1.2 4,609,453 - Shewana3_3838 0.19 +0.8 4,609,537 - Shewana3_3838 0.32 +0.0
Or see this region's nucleotide sequence