Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3804 and Shewana3_3805 are separated by 310 nucleotides Shewana3_3805 and Shewana3_3806 are separated by 20 nucleotides
Shewana3_3804: Shewana3_3804 - filamentation induced by cAMP protein Fic (RefSeq), at 4,568,836 to 4,569,951
_3804
Shewana3_3805: Shewana3_3805 - hypothetical protein (RefSeq), at 4,570,262 to 4,571,080
_3805
Shewana3_3806: Shewana3_3806 - major facilitator transporter (RefSeq), at 4,571,101 to 4,572,588
_3806
Position (kb)
4570
4571
4572 Strain fitness (log2 ratio)
-2
-1
0
1 at 4569.335 kb on - strand, within Shewana3_3804 at 4569.410 kb on - strand, within Shewana3_3804 at 4569.434 kb on + strand, within Shewana3_3804 at 4569.550 kb on - strand, within Shewana3_3804 at 4569.560 kb on - strand, within Shewana3_3804 at 4569.604 kb on + strand, within Shewana3_3804 at 4569.752 kb on + strand, within Shewana3_3804 at 4569.798 kb on - strand, within Shewana3_3804 at 4569.809 kb on + strand, within Shewana3_3804 at 4569.899 kb on - strand at 4569.945 kb on - strand at 4570.061 kb on - strand at 4570.061 kb on - strand at 4570.179 kb on + strand at 4570.305 kb on + strand at 4570.325 kb on + strand at 4570.340 kb on - strand at 4570.518 kb on + strand, within Shewana3_3805 at 4570.781 kb on - strand, within Shewana3_3805 at 4570.854 kb on + strand, within Shewana3_3805 at 4570.939 kb on - strand, within Shewana3_3805 at 4571.140 kb on + strand at 4571.140 kb on + strand at 4571.308 kb on + strand, within Shewana3_3806 at 4571.397 kb on - strand, within Shewana3_3806 at 4571.484 kb on + strand, within Shewana3_3806 at 4571.492 kb on - strand, within Shewana3_3806 at 4571.492 kb on - strand, within Shewana3_3806 at 4571.492 kb on - strand, within Shewana3_3806 at 4571.725 kb on + strand, within Shewana3_3806 at 4571.764 kb on + strand, within Shewana3_3806 at 4571.885 kb on - strand, within Shewana3_3806
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,569,335 - Shewana3_3804 0.45 -0.4 4,569,410 - Shewana3_3804 0.51 +0.3 4,569,434 + Shewana3_3804 0.54 +0.4 4,569,550 - Shewana3_3804 0.64 +0.8 4,569,560 - Shewana3_3804 0.65 -0.3 4,569,604 + Shewana3_3804 0.69 -0.0 4,569,752 + Shewana3_3804 0.82 -0.3 4,569,798 - Shewana3_3804 0.86 +0.8 4,569,809 + Shewana3_3804 0.87 -0.4 4,569,899 - +0.5 4,569,945 - +0.6 4,570,061 - +0.3 4,570,061 - +0.5 4,570,179 + +0.3 4,570,305 + +0.0 4,570,325 + +1.0 4,570,340 - +0.7 4,570,518 + Shewana3_3805 0.31 -0.2 4,570,781 - Shewana3_3805 0.63 -1.1 4,570,854 + Shewana3_3805 0.72 -2.5 4,570,939 - Shewana3_3805 0.83 -0.3 4,571,140 + -2.0 4,571,140 + -0.3 4,571,308 + Shewana3_3806 0.14 -0.8 4,571,397 - Shewana3_3806 0.20 +0.2 4,571,484 + Shewana3_3806 0.26 -1.1 4,571,492 - Shewana3_3806 0.26 -0.2 4,571,492 - Shewana3_3806 0.26 -1.8 4,571,492 - Shewana3_3806 0.26 -1.0 4,571,725 + Shewana3_3806 0.42 -0.4 4,571,764 + Shewana3_3806 0.45 +0.1 4,571,885 - Shewana3_3806 0.53 +0.4
Or see this region's nucleotide sequence