Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3704 and Shewana3_3705 are separated by 26 nucleotides Shewana3_3705 and Shewana3_3706 are separated by 40 nucleotides Shewana3_3706 and Shewana3_3707 are separated by 31 nucleotides
Shewana3_3704: Shewana3_3704 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 4,445,925 to 4,447,502
_3704
Shewana3_3705: Shewana3_3705 - C factor cell-cell signaling protein (RefSeq), at 4,447,529 to 4,448,239
_3705
Shewana3_3706: Shewana3_3706 - hypothetical protein (RefSeq), at 4,448,280 to 4,448,756
_3706
Shewana3_3707: Shewana3_3707 - response regulator receiver protein (RefSeq), at 4,448,788 to 4,449,339
_3707
Position (kb)
4447
4448
4449 Strain fitness (log2 ratio)
-1
0
1 at 4446.630 kb on + strand, within Shewana3_3704 at 4446.638 kb on - strand, within Shewana3_3704 at 4446.744 kb on + strand, within Shewana3_3704 at 4446.981 kb on - strand, within Shewana3_3704 at 4447.239 kb on - strand, within Shewana3_3704 at 4447.239 kb on - strand, within Shewana3_3704 at 4447.437 kb on - strand at 4447.565 kb on + strand at 4447.573 kb on - strand at 4447.633 kb on + strand, within Shewana3_3705 at 4447.691 kb on - strand, within Shewana3_3705 at 4447.740 kb on + strand, within Shewana3_3705 at 4447.749 kb on + strand, within Shewana3_3705 at 4447.760 kb on + strand, within Shewana3_3705 at 4447.760 kb on - strand, within Shewana3_3705 at 4447.873 kb on + strand, within Shewana3_3705 at 4447.979 kb on - strand, within Shewana3_3705 at 4448.174 kb on - strand at 4448.276 kb on + strand at 4448.567 kb on - strand, within Shewana3_3706 at 4448.732 kb on + strand at 4448.758 kb on + strand at 4448.934 kb on + strand, within Shewana3_3707 at 4448.942 kb on - strand, within Shewana3_3707 at 4448.942 kb on - strand, within Shewana3_3707 at 4449.212 kb on - strand, within Shewana3_3707
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,446,630 + Shewana3_3704 0.45 -0.8 4,446,638 - Shewana3_3704 0.45 +0.6 4,446,744 + Shewana3_3704 0.52 -0.0 4,446,981 - Shewana3_3704 0.67 -0.4 4,447,239 - Shewana3_3704 0.83 -0.7 4,447,239 - Shewana3_3704 0.83 -1.4 4,447,437 - +0.4 4,447,565 + +0.6 4,447,573 - +0.2 4,447,633 + Shewana3_3705 0.15 -0.1 4,447,691 - Shewana3_3705 0.23 -0.3 4,447,740 + Shewana3_3705 0.30 -0.7 4,447,749 + Shewana3_3705 0.31 -1.1 4,447,760 + Shewana3_3705 0.32 -1.7 4,447,760 - Shewana3_3705 0.32 -0.7 4,447,873 + Shewana3_3705 0.48 -0.7 4,447,979 - Shewana3_3705 0.63 -0.5 4,448,174 - -0.9 4,448,276 + +0.7 4,448,567 - Shewana3_3706 0.60 -0.1 4,448,732 + -1.0 4,448,758 + -0.0 4,448,934 + Shewana3_3707 0.26 +0.1 4,448,942 - Shewana3_3707 0.28 +0.0 4,448,942 - Shewana3_3707 0.28 +0.0 4,449,212 - Shewana3_3707 0.77 +0.2
Or see this region's nucleotide sequence