Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3705

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3704 and Shewana3_3705 are separated by 26 nucleotidesShewana3_3705 and Shewana3_3706 are separated by 40 nucleotidesShewana3_3706 and Shewana3_3707 are separated by 31 nucleotides Shewana3_3704: Shewana3_3704 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 4,445,925 to 4,447,502 _3704 Shewana3_3705: Shewana3_3705 - C factor cell-cell signaling protein (RefSeq), at 4,447,529 to 4,448,239 _3705 Shewana3_3706: Shewana3_3706 - hypothetical protein (RefSeq), at 4,448,280 to 4,448,756 _3706 Shewana3_3707: Shewana3_3707 - response regulator receiver protein (RefSeq), at 4,448,788 to 4,449,339 _3707 Position (kb) 4447 4448 4449Strain fitness (log2 ratio) -1 0 1at 4446.630 kb on + strand, within Shewana3_3704at 4446.638 kb on - strand, within Shewana3_3704at 4446.744 kb on + strand, within Shewana3_3704at 4446.981 kb on - strand, within Shewana3_3704at 4447.239 kb on - strand, within Shewana3_3704at 4447.239 kb on - strand, within Shewana3_3704at 4447.437 kb on - strandat 4447.565 kb on + strandat 4447.573 kb on - strandat 4447.633 kb on + strand, within Shewana3_3705at 4447.691 kb on - strand, within Shewana3_3705at 4447.740 kb on + strand, within Shewana3_3705at 4447.749 kb on + strand, within Shewana3_3705at 4447.760 kb on + strand, within Shewana3_3705at 4447.760 kb on - strand, within Shewana3_3705at 4447.873 kb on + strand, within Shewana3_3705at 4447.979 kb on - strand, within Shewana3_3705at 4448.174 kb on - strandat 4448.276 kb on + strandat 4448.567 kb on - strand, within Shewana3_3706at 4448.732 kb on + strandat 4448.758 kb on + strandat 4448.934 kb on + strand, within Shewana3_3707at 4448.942 kb on - strand, within Shewana3_3707at 4448.942 kb on - strand, within Shewana3_3707at 4449.212 kb on - strand, within Shewana3_3707

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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4,446,630 + Shewana3_3704 0.45 -0.8
4,446,638 - Shewana3_3704 0.45 +0.6
4,446,744 + Shewana3_3704 0.52 -0.0
4,446,981 - Shewana3_3704 0.67 -0.4
4,447,239 - Shewana3_3704 0.83 -0.7
4,447,239 - Shewana3_3704 0.83 -1.4
4,447,437 - +0.4
4,447,565 + +0.6
4,447,573 - +0.2
4,447,633 + Shewana3_3705 0.15 -0.1
4,447,691 - Shewana3_3705 0.23 -0.3
4,447,740 + Shewana3_3705 0.30 -0.7
4,447,749 + Shewana3_3705 0.31 -1.1
4,447,760 + Shewana3_3705 0.32 -1.7
4,447,760 - Shewana3_3705 0.32 -0.7
4,447,873 + Shewana3_3705 0.48 -0.7
4,447,979 - Shewana3_3705 0.63 -0.5
4,448,174 - -0.9
4,448,276 + +0.7
4,448,567 - Shewana3_3706 0.60 -0.1
4,448,732 + -1.0
4,448,758 + -0.0
4,448,934 + Shewana3_3707 0.26 +0.1
4,448,942 - Shewana3_3707 0.28 +0.0
4,448,942 - Shewana3_3707 0.28 +0.0
4,449,212 - Shewana3_3707 0.77 +0.2

Or see this region's nucleotide sequence