Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3669 and rpmE are separated by 511 nucleotides rpmE and Shewana3_3671 are separated by 165 nucleotides Shewana3_3671 and Shewana3_3672 are separated by 103 nucleotides
Shewana3_3669: Shewana3_3669 - malic enzyme, NAD-binding (RefSeq), at 4,406,608 to 4,407,852
_3669
Shewana3_3670: rpmE - 50S ribosomal protein L31 (RefSeq), at 4,408,364 to 4,408,576
rpmE
Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917
_3671
Shewana3_3672: Shewana3_3672 - primosomal protein N' (RefSeq), at 4,410,021 to 4,412,231
_3672
Position (kb)
4408
4409
4410 Strain fitness (log2 ratio)
-2
-1
0
1 at 4407.850 kb on + strand at 4407.890 kb on - strand at 4407.928 kb on + strand at 4407.946 kb on - strand at 4407.951 kb on + strand at 4407.951 kb on + strand at 4408.099 kb on + strand at 4408.823 kb on + strand at 4408.875 kb on + strand, within Shewana3_3671 at 4409.061 kb on + strand, within Shewana3_3671 at 4409.088 kb on + strand, within Shewana3_3671 at 4409.088 kb on + strand, within Shewana3_3671 at 4409.157 kb on + strand, within Shewana3_3671 at 4409.172 kb on + strand, within Shewana3_3671 at 4409.172 kb on + strand, within Shewana3_3671 at 4409.180 kb on - strand, within Shewana3_3671 at 4409.180 kb on - strand, within Shewana3_3671 at 4409.202 kb on + strand, within Shewana3_3671 at 4409.210 kb on - strand, within Shewana3_3671 at 4409.230 kb on - strand, within Shewana3_3671 at 4409.230 kb on - strand, within Shewana3_3671 at 4409.307 kb on + strand, within Shewana3_3671 at 4409.307 kb on + strand, within Shewana3_3671 at 4409.549 kb on + strand, within Shewana3_3671 at 4409.653 kb on + strand, within Shewana3_3671 at 4409.654 kb on - strand, within Shewana3_3671 at 4409.666 kb on + strand, within Shewana3_3671 at 4409.666 kb on + strand, within Shewana3_3671 at 4409.674 kb on - strand, within Shewana3_3671 at 4409.674 kb on - strand, within Shewana3_3671 at 4409.694 kb on + strand, within Shewana3_3671 at 4409.860 kb on + strand at 4409.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,407,850 + +0.0 4,407,890 - +0.4 4,407,928 + -2.0 4,407,946 - +0.0 4,407,951 + -1.4 4,407,951 + -1.0 4,408,099 + +0.2 4,408,823 + +0.3 4,408,875 + Shewana3_3671 0.11 -0.3 4,409,061 + Shewana3_3671 0.27 -0.8 4,409,088 + Shewana3_3671 0.29 -0.0 4,409,088 + Shewana3_3671 0.29 -0.1 4,409,157 + Shewana3_3671 0.35 +0.7 4,409,172 + Shewana3_3671 0.37 +1.4 4,409,172 + Shewana3_3671 0.37 -0.3 4,409,180 - Shewana3_3671 0.37 +0.7 4,409,180 - Shewana3_3671 0.37 +0.8 4,409,202 + Shewana3_3671 0.39 +1.6 4,409,210 - Shewana3_3671 0.40 +0.6 4,409,230 - Shewana3_3671 0.41 -0.0 4,409,230 - Shewana3_3671 0.41 -0.1 4,409,307 + Shewana3_3671 0.48 +0.0 4,409,307 + Shewana3_3671 0.48 +0.2 4,409,549 + Shewana3_3671 0.69 -2.2 4,409,653 + Shewana3_3671 0.77 +0.2 4,409,654 - Shewana3_3671 0.78 +0.7 4,409,666 + Shewana3_3671 0.79 -0.1 4,409,666 + Shewana3_3671 0.79 +0.0 4,409,674 - Shewana3_3671 0.79 +0.8 4,409,674 - Shewana3_3671 0.79 -0.4 4,409,694 + Shewana3_3671 0.81 +0.2 4,409,860 + -2.2 4,409,932 - +1.0
Or see this region's nucleotide sequence