Experiment: Thallium(I) acetate 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3659 and Shewana3_3660 are separated by 2 nucleotides Shewana3_3660 and Shewana3_3661 overlap by 4 nucleotides
Shewana3_3659: Shewana3_3659 - type II secretion system protein (RefSeq), at 4,394,861 to 4,396,081
_3659
Shewana3_3660: Shewana3_3660 - type II secretion system protein E (RefSeq), at 4,396,084 to 4,397,844
_3660
Shewana3_3661: Shewana3_3661 - TPR repeat-containing protein (RefSeq), at 4,397,841 to 4,399,184
_3661
Position (kb)
4396
4397
4398 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4395.127 kb on - strand, within Shewana3_3659 at 4395.474 kb on + strand, within Shewana3_3659 at 4395.567 kb on + strand, within Shewana3_3659 at 4395.624 kb on + strand, within Shewana3_3659 at 4395.832 kb on + strand, within Shewana3_3659 at 4395.935 kb on - strand, within Shewana3_3659 at 4396.089 kb on + strand at 4396.224 kb on + strand at 4396.426 kb on - strand, within Shewana3_3660 at 4396.438 kb on - strand, within Shewana3_3660 at 4396.450 kb on - strand, within Shewana3_3660 at 4396.602 kb on + strand, within Shewana3_3660 at 4396.885 kb on + strand, within Shewana3_3660 at 4396.961 kb on - strand, within Shewana3_3660 at 4397.124 kb on + strand, within Shewana3_3660 at 4397.327 kb on - strand, within Shewana3_3660 at 4397.697 kb on + strand at 4397.712 kb on + strand at 4397.752 kb on - strand at 4397.889 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.913 kb on + strand at 4397.921 kb on - strand at 4397.921 kb on - strand at 4397.976 kb on + strand, within Shewana3_3661 at 4397.984 kb on - strand, within Shewana3_3661 at 4398.245 kb on - strand, within Shewana3_3661 at 4398.316 kb on - strand, within Shewana3_3661 at 4398.357 kb on - strand, within Shewana3_3661 at 4398.457 kb on + strand, within Shewana3_3661 at 4398.526 kb on + strand, within Shewana3_3661 at 4398.589 kb on - strand, within Shewana3_3661 at 4398.631 kb on - strand, within Shewana3_3661 at 4398.685 kb on + strand, within Shewana3_3661 at 4398.804 kb on - strand, within Shewana3_3661 at 4398.836 kb on + strand, within Shewana3_3661
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml remove 4,395,127 - Shewana3_3659 0.22 -0.1 4,395,474 + Shewana3_3659 0.50 +0.0 4,395,567 + Shewana3_3659 0.58 +0.5 4,395,624 + Shewana3_3659 0.62 -0.6 4,395,832 + Shewana3_3659 0.80 -0.4 4,395,935 - Shewana3_3659 0.88 -0.1 4,396,089 + -2.5 4,396,224 + -3.2 4,396,426 - Shewana3_3660 0.19 +0.1 4,396,438 - Shewana3_3660 0.20 -0.4 4,396,450 - Shewana3_3660 0.21 +0.0 4,396,602 + Shewana3_3660 0.29 -1.6 4,396,885 + Shewana3_3660 0.45 -2.0 4,396,961 - Shewana3_3660 0.50 -0.6 4,397,124 + Shewana3_3660 0.59 -1.0 4,397,327 - Shewana3_3660 0.71 +0.6 4,397,697 + +0.1 4,397,712 + +0.5 4,397,752 - -0.4 4,397,889 + -0.7 4,397,913 + -0.2 4,397,913 + -0.5 4,397,913 + -0.3 4,397,913 + +0.5 4,397,913 + -0.3 4,397,921 - +0.3 4,397,921 - +0.2 4,397,976 + Shewana3_3661 0.10 -0.8 4,397,984 - Shewana3_3661 0.11 +0.4 4,398,245 - Shewana3_3661 0.30 +0.2 4,398,316 - Shewana3_3661 0.35 +0.0 4,398,357 - Shewana3_3661 0.38 -0.1 4,398,457 + Shewana3_3661 0.46 +0.0 4,398,526 + Shewana3_3661 0.51 -2.0 4,398,589 - Shewana3_3661 0.56 +0.1 4,398,631 - Shewana3_3661 0.59 -0.8 4,398,685 + Shewana3_3661 0.63 -0.7 4,398,804 - Shewana3_3661 0.72 -0.6 4,398,836 + Shewana3_3661 0.74 -0.6
Or see this region's nucleotide sequence