Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3446

Experiment: Thallium(I) acetate 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3445 and Shewana3_3446 are separated by 73 nucleotidesShewana3_3446 and Shewana3_3447 are separated by 155 nucleotides Shewana3_3445: Shewana3_3445 - glutathione synthetase (RefSeq), at 4,127,283 to 4,128,230 _3445 Shewana3_3446: Shewana3_3446 - alkaline phosphatase (RefSeq), at 4,128,304 to 4,129,698 _3446 Shewana3_3447: Shewana3_3447 - 16S rRNA m(2)G 1207 methyltransferase (RefSeq), at 4,129,854 to 4,130,915 _3447 Position (kb) 4128 4129 4130Strain fitness (log2 ratio) -3 -2 -1 0 1at 4127.369 kb on + strandat 4127.369 kb on + strandat 4127.450 kb on + strand, within Shewana3_3445at 4127.496 kb on + strand, within Shewana3_3445at 4127.504 kb on - strand, within Shewana3_3445at 4127.537 kb on - strand, within Shewana3_3445at 4127.642 kb on - strand, within Shewana3_3445at 4127.749 kb on + strand, within Shewana3_3445at 4128.138 kb on + strandat 4128.344 kb on + strandat 4128.586 kb on - strand, within Shewana3_3446at 4128.778 kb on + strand, within Shewana3_3446at 4128.962 kb on - strand, within Shewana3_3446at 4128.984 kb on + strand, within Shewana3_3446at 4129.238 kb on - strand, within Shewana3_3446at 4129.363 kb on - strand, within Shewana3_3446at 4129.368 kb on - strand, within Shewana3_3446at 4129.387 kb on - strand, within Shewana3_3446at 4129.387 kb on - strand, within Shewana3_3446at 4129.417 kb on - strand, within Shewana3_3446at 4129.547 kb on + strand, within Shewana3_3446at 4129.548 kb on - strand, within Shewana3_3446at 4129.777 kb on + strandat 4129.887 kb on + strandat 4129.979 kb on + strand, within Shewana3_3447at 4129.987 kb on - strand, within Shewana3_3447at 4129.999 kb on - strand, within Shewana3_3447at 4130.116 kb on - strand, within Shewana3_3447at 4130.127 kb on + strand, within Shewana3_3447at 4130.151 kb on - strand, within Shewana3_3447at 4130.225 kb on + strand, within Shewana3_3447at 4130.246 kb on - strand, within Shewana3_3447at 4130.334 kb on - strand, within Shewana3_3447at 4130.434 kb on + strand, within Shewana3_3447at 4130.499 kb on + strand, within Shewana3_3447at 4130.543 kb on + strand, within Shewana3_3447

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.064 mg/ml
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4,127,369 + -0.9
4,127,369 + -1.1
4,127,450 + Shewana3_3445 0.18 -2.1
4,127,496 + Shewana3_3445 0.22 -0.6
4,127,504 - Shewana3_3445 0.23 -2.0
4,127,537 - Shewana3_3445 0.27 -2.1
4,127,642 - Shewana3_3445 0.38 -1.6
4,127,749 + Shewana3_3445 0.49 -2.6
4,128,138 + -2.0
4,128,344 + -0.2
4,128,586 - Shewana3_3446 0.20 +0.0
4,128,778 + Shewana3_3446 0.34 +0.2
4,128,962 - Shewana3_3446 0.47 +0.9
4,128,984 + Shewana3_3446 0.49 +0.2
4,129,238 - Shewana3_3446 0.67 -0.5
4,129,363 - Shewana3_3446 0.76 -0.9
4,129,368 - Shewana3_3446 0.76 -0.4
4,129,387 - Shewana3_3446 0.78 -1.1
4,129,387 - Shewana3_3446 0.78 -1.5
4,129,417 - Shewana3_3446 0.80 +0.1
4,129,547 + Shewana3_3446 0.89 -2.9
4,129,548 - Shewana3_3446 0.89 -0.2
4,129,777 + +0.0
4,129,887 + -0.7
4,129,979 + Shewana3_3447 0.12 -0.1
4,129,987 - Shewana3_3447 0.13 -0.1
4,129,999 - Shewana3_3447 0.14 +0.4
4,130,116 - Shewana3_3447 0.25 +1.0
4,130,127 + Shewana3_3447 0.26 +0.1
4,130,151 - Shewana3_3447 0.28 -0.1
4,130,225 + Shewana3_3447 0.35 -0.6
4,130,246 - Shewana3_3447 0.37 +0.3
4,130,334 - Shewana3_3447 0.45 -0.2
4,130,434 + Shewana3_3447 0.55 -0.2
4,130,499 + Shewana3_3447 0.61 +0.8
4,130,543 + Shewana3_3447 0.65 +0.3

Or see this region's nucleotide sequence